LOCUS BC026313 3304 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens ankyrin repeat and sterile alpha motif domain
containing 1B, mRNA (cDNA clone IMAGE:4811885), complete cds.
ACCESSION BC026313
VERSION BC026313.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3304)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3304)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: j Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50511946
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3304
/db_xref="H-InvDB:HIT000040190"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4811885"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3304
/gene="ANKS1B"
/gene_synonym="AIDA"
/gene_synonym="AIDA-1"
/gene_synonym="ANKS2"
/gene_synonym="cajalin-2"
/gene_synonym="EB-1"
/gene_synonym="MGC26087"
/db_xref="GeneID:56899"
/db_xref="HGNC:HGNC:24600"
/db_xref="MIM:607815"
CDS 203..1735
/gene="ANKS1B"
/gene_synonym="AIDA"
/gene_synonym="AIDA-1"
/gene_synonym="ANKS2"
/gene_synonym="cajalin-2"
/gene_synonym="EB-1"
/gene_synonym="MGC26087"
/codon_start=1
/product="ankyrin repeat and sterile alpha motif domain
containing 1B"
/protein_id="AAH26313.2"
/db_xref="GeneID:56899"
/db_xref="HGNC:HGNC:24600"
/db_xref="MIM:607815"
/translation="MMWQCHPSAQDYRYYPVDGYSLLKRFPLHPLTGPRCPVQTVGQW
LESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKM
RPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINVLKINLIG
HRKRILASLGDRLHDDPPQKPPRSITLREPSGNHTPPQLSPSLSQSTYTTGGSLDVPH
IIMQGDARRRRNENYFDDIPRSKLERQMAQSSVCEIWTNQNAGFPFSAIHQVHNTGDW
GEPSITLRPPNEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDA
CAKMRANCQKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPED
LSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSST
LPESFENKPSKPIPKPRVSIRKSVQIDPSEQKTLANLPWIVEPGQEAKRGINTKYETT
IF"
BASE COUNT 1035 a 709 c 645 g 915 t
ORIGIN
1 cttcttctgc tgcctggttt tgggggctgt atgacgtact ggtcggtagt aaagattaat
61 atgtaagaaa tgtggagcta ggatcaggtc atactccaca gcctgcctgg caaactatgt
121 tttacttctg actttgctct ctcgctgaga acattaatct gtcaagctgg cgggctcctt
181 tgatagcaac tttcccaggg gcatgatgtg gcaatgccac ccctcagccc aggactaccg
241 ctattacccc gtggacggct actccctgct taaacgcttc cctcttcatc ctcttacagg
301 acccagatgc cctgtccaaa cagtgggaca atggttggaa agcattgggc tacctcagta
361 cgagaaccac ctgatggcta atggatttga caatgtgcag tttatgggaa gcaatgttat
421 ggaagatcag gatttgttgg aaattggaat ccttaattct gggcacagac aaagaattct
481 acaggcaatc cagctccttc caaagatgag acccattggg catgatggct accatcccac
541 ctctgtagct gagtggctgg attccattga actgggcgac tacaccaaag cctttctaat
601 taatggctac acttcgatgg acctgttgaa aaaaatctgg gaggttgaac ttattaatgt
661 tttaaaaatc aatttgattg gccacaggaa acgtattttg gcatctctgg gagacaggct
721 gcacgacgat cccccacaga agccccctcg gtccatcacc ctcagggaac ccagtggtaa
781 tcacactcct cctcagttgt ctccatcact tagccaaagc acttacacca ctggtggctc
841 cctagacgtt cctcacatta tcatgcaggg cgatgcaagg aggagaagaa atgaaaacta
901 ctttgatgat attccccgat caaaactgga gaggcagatg gctcagtcgt ctgtctgtga
961 aatatggacg aatcagaacg caggatttcc tttctcagcg atccatcagg ttcataatac
1021 aggagactgg ggagaacctt ccattacctt gcgacctccg aatgaagcca cagcctctac
1081 cccggtacag tactggcagc atcacccaga aaagcttatc ttccagtcgt gtgattacaa
1141 agctttttat ttaggttcta tgctgataaa agagcttagg gggacagaat caacccaaga
1201 tgcttgtgca aaaatgcggg ctaactgtca gaagtctaca gagcaaatga agaaggtccc
1261 tactattatt ctttctgtct catataaagg agtcaaattt attgatgcaa caaataagaa
1321 cataattgct gagcatgaaa ttcgtaatat ctcctgtgct gcccaggacc cagaagacct
1381 ctcaacattt gcctatatca caaaagattt gaagtctaat caccactact gtcatgtgtt
1441 tactgccttt gatgtgaatt tagcctatga aatcatccta accctgggac aggcattcga
1501 agtcgcttac cagctagcac tacaagcaag aaaaggggga cactcctcca cacttccaga
1561 aagctttgaa aacaaaccct ccaaacccat ccccaagccc cgcgttagca ttcgcaagtc
1621 cgtgcagatc gacccatctg agcaaaagac tctggccaat ctaccgtgga ttgtggagcc
1681 gggccaagaa gccaagaggg gcattaatac caagtatgaa accacgattt tctgatactc
1741 gccgtcctcc tgtcctcgcg gtgccttgct cgccaagcgg tcccggagca ggctttcctt
1801 cgcgcctccg cgtccaccca gcccaggagg aagactgctc tgagcgtgcg gccttgttac
1861 gggcgaaagg ccactggcca ttcctgggga agttctttct gcaccagtga tggaaaacgc
1921 aagactttcc agtcgcaacc cctgagaggc gtgagttgag atgggttttc cctgatgctc
1981 ccgactcccc tccacaccac ctcccaaggt atttctgatg actccgcccc agtacttgct
2041 ttgcttcatt tggggaaaat aatacctttt ctttaaaaaa aaaaaaaaaa aaaaaaagta
2101 aaggggatct ctaatactgc ctaaaagtat gctttcactg tcagcagttt taaaggtgaa
2161 atcagagcag cactacccct cccacctcca aagcatctgt aaaatcattc tatcattgag
2221 tatcgtttac tgcaaaagga caaaaacaac tcccgtgata tgattgccag gagattctgt
2281 ttccccattt ctatatttgt ggattttata tgtaatcacc tatgtcagag aaagaaaacc
2341 tttcaaccaa atgattggtt caaaaggaaa gaatgattca aagcagagga atttattatg
2401 cacagcaaaa tgtgtcttgt attaaatatt tttattaaaa gaatgtttca ttaatgcatt
2461 gataagaaaa ctaggttagt tgcgagggat gtttctggtt tcatttcaaa taattaaatt
2521 tctactgcta ctaccaagag gactggctca gtggtggcaa aatactggtg atgctcccta
2581 gagcaggagg cccggaagtg ctgacgcagc catcagcctg ccaagattgt tttttaatct
2641 tcacagtgtt ttaaagaaca tgttaaaaaa aaaaaaatct agtgctcctg ctgtcaagat
2701 ttctgtcatg gaaaccttgt ttgagaaagg tgttaataaa attctattgc aaaaatttct
2761 ttttctagaa aaaataaata caaaaaaaaa aaagaagaaa ttccaaagta ataaaacttt
2821 tcttgagaca aacaaaaaaa aagtttgctt actatttgat taaataaaat ttacttacat
2881 ttctttaagg tattttaatt ttttaatgtc tctgtggagt atttgtatga taccataatg
2941 tatatttatg tagaatcaaa ttatataaac agtaccaata tcattataga aaaaaataac
3001 attttaatgt atattgttct aacaatcata ttgtgaatca ttttgaagtt cattatagcg
3061 atattgataa attgtggaat tgtcttaatg tttttttatt aactgacatt attttaaacc
3121 taactgagat gatcagttac attcatcagt tggtgagttt tgaagaataa ctacatttta
3181 tttcaaacta acaaatgtat acggttttag ttcagtgttg aagaatttta atacaatatt
3241 aaattacttg aactgaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaagaa aaaaaaaaaa
3301 aaaa
//