LOCUS BC026311 3691 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens LIM domain only 3 (rhombotin-like 2), mRNA (cDNA clone
MGC:26081 IMAGE:4799836), complete cds.
ACCESSION BC026311
VERSION BC026311.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3691)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3691)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: h Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41350202.
FEATURES Location/Qualifiers
source 1..3691
/db_xref="H-InvDB:HIT000040189"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26081 IMAGE:4799836"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3691
/gene="LMO3"
/gene_synonym="DAT1"
/gene_synonym="MGC26081"
/gene_synonym="RBTN3"
/gene_synonym="Rhom-3"
/gene_synonym="RHOM3"
/db_xref="GeneID:55885"
/db_xref="HGNC:HGNC:6643"
/db_xref="MIM:180386"
CDS 442..879
/gene="LMO3"
/gene_synonym="DAT1"
/gene_synonym="MGC26081"
/gene_synonym="RBTN3"
/gene_synonym="Rhom-3"
/gene_synonym="RHOM3"
/codon_start=1
/product="LIM domain only 3 (rhombotin-like 2)"
/protein_id="AAH26311.1"
/db_xref="GeneID:55885"
/db_xref="HGNC:HGNC:6643"
/db_xref="MIM:180386"
/translation="MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCD
CRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR"
BASE COUNT 1096 a 677 c 681 g 1237 t
ORIGIN
1 gcttctctgt ggtcttgaca agcgctgcct gggctccgcc ggctcactaa taactgagtg
61 accttttctt tggctgtatt atgtctggct gggaagggat tgcattttgc agctgagagc
121 cggagcttcc ttcagctcgg ctcctcgcac gctgctgggg taagttgtct tgaaccagga
181 cggagagaga cagcctcgga ctgcagttgc ctaaaaggag gacacctgtg gctcagatgc
241 ggtcaacacc attgcttggc gtatccttga ggacctcatt attttaaact taaaaaaaaa
301 tagacattcc ctcccccgtc tttttttttt tttttcaaac aatgcttctt tttgaccttt
361 cccaaggaga agcgctacaa agcagccact gtgcttactg aacggcctcc ccctgtatcg
421 cttaattgag aaggtataca aatgctctca gtccagccag acaccaagcc gaaaggttgt
481 gctggctgca accgaaagat caaggaccgg tatcttctaa aggcactgga caaatactgg
541 catgaagact gcctgaagtg tgcctgctgt gactgtcgct tgggagaggt gggctccacc
601 ctgtacacta aagctaatct tatcctttgt cgcagagact atctgaggct ctttggtgta
661 acgggaaact gcgctgcctg tagtaagctc atccctgcct ttgagatggt gatgcgtgcc
721 aaggacaatg tttaccacct ggactgcttt gcatgtcagc tttgtaatca gagattttgt
781 gttggagaca aatttttcct aaagaataac atgatccttt gccagacgga ctacgaggaa
841 ggtttaatga aagaaggtta tgcaccccag gttcgctgat ctatcaacat caccccatta
901 agaatacaaa gcactacatt cttttatctt ttttgctcca catgtacata agaattgaca
961 caggaaccta ctgaatagcg tagatatagg aaggcaggat ggttatatgg aataaaaggc
1021 ggactgcatc tgtatgtagt gaaattgccc cagttcagag ttgaatgttt attattaaag
1081 aaaaaagtaa tgtacatatg gctggatttt tttgcttgct attcgttttt gtgtcacttg
1141 gcatgagatg tttattttgg actattgtat ataatgtatt gtaatatttg aagcacaaat
1201 gtaatacagt tttattgtgt taccatttgt gttccatttg cttctttgta ttgttgcatt
1261 tagtacaatc agtgtttaaa cttactgtat atttatgctt tctgtattta ccagctattt
1321 taaatgagct gtaactttct agtaaagaat tgaaaagcaa atctcactaa tgatacacac
1381 atagataaag caagtctatc aacattaaaa tactaaaaaa taaagacaca cacagagcat
1441 tttagtgaca tccactactt attgccgcta tgagttagag tctatcagtg ttcttgttat
1501 aaccccctat tttcaggggg ttaaaaatca gccttaaaaa aatacataaa aatttcatct
1561 taaagcactt tcattttata ccaacgtgaa aagtgccatt tttagaataa ctttaaagct
1621 taacaggttt ccttttaata tccttttttt gtgtgctctt tacttacaca atggctttgt
1681 tttgcttttt cagccacacc ccttatgtga actagtgcct ttgggtatca cgtaaaattt
1741 tttccaaagg gttactttaa aaatctgtta ccacaattat gagatgattt ttaagtgata
1801 aattaaactt cttcttgtat aaattctgcc cagatctctc cacaagagct gagggtttca
1861 taactttatg gcttaataaa tgtatgacac tgaaaagatt tgagtgtgaa tctactgaaa
1921 tcactataat gcacattgaa gctatgatgg tatttgagta gtgaggttac ttttgatcgg
1981 agcaacataa tgctcataga atcttctaga agaagagaaa caaagggatt gataaaatgc
2041 tgagaactag tgattatata tttttctgta tttacctgac atttatttta atgttcaaaa
2101 agtaaacact ttaagtttga tgtgttttac tctctcattg ttttaagtaa ttgccaactc
2161 agaatacatc attcttaggc tgaaatttgt ctttccattt tttaaggtga aatagtacta
2221 ccttacgtga tagcatacaa agaagaaagc tctagaaaga gaaattatgg agaatgatta
2281 tttaaattac aattaaggaa atgagaatat gatcccctct tccgagttgc ccacaaactt
2341 gcttctttgc ttttgctccc tgtaatagaa ctacttttca acaaatctaa ttttgcacgg
2401 caccgttaac catattttca ctacagcaaa cttagtgcta tgggttttct ttttctttgt
2461 ttttttcttg atcacttgta taggaaacaa tattttccag tgttatttgc atatatattt
2521 tgtccttcca atatatgcat tacagatgaa aattaaatgt tatacctgaa ttcttgggtt
2581 ggggccaaaa tattaagctg aaaataatgc tggtgtggat ttgttttaaa acaaagcttt
2641 attatgaaca tgcatgtgaa tctggatatt gcctcttatt tttaagaaaa tggttctgtg
2701 aaaagtgaat gatatgtatt tttccaaatg cttcatggtt aggagtcttc aagttccatg
2761 ttccccagat ttgagatata ctaaagaaag aaattcaaaa gtagctattt ggggcccaca
2821 aaaataacta ttattttagc cttagagcct tacacttgtt tcatgaagag aaaggacttg
2881 cataaccaaa ataaacaaag caagacaaat taaaaatatg tgggggagag atcagtgaaa
2941 agtggttttc ttaatgcagc cctgctggtc cccattaaca attgcttgaa attcacatgg
3001 atgtaaaatt ataattgtca ggatcttatt cagatgatct tttaaggttt aactggtttt
3061 gcttttgttt atctatatgt caaaatactt gtaaattggg aacaaacttc tctcagcttc
3121 ttgaagttgt tcaactatcc ttgccactgg aagaccaaac aaggttttca ctgctttttc
3181 ttttacataa tatgctgaga attatttctt atgcttttta ctacaaacaa aattactcac
3241 ctggattaaa gattaaggcc ttaatctgtt tagattatct ttaatctcca tgaaatcgtg
3301 aaataagaca agaatagtgt ttcagctgta ggccatttta cagctaattg cccataaatt
3361 gtagcattta ttgacctgaa gtactaagct aattgtcttg actactcaaa gcccctgaat
3421 tgttgtcaac tttccccttt gagttgtgta gccctaacgt catttagctt gttgtctgat
3481 gcctccagta ggacacctcc gatggagctt tgatttctga gcagcgaaag ctcccttcct
3541 aagatgcatc tcgcataggc tgcctatgat gaaggaccgt gcacctccac tccaacagag
3601 tgctgagttt aaaagttgac ctgtgtttgt aatttcactt tcatcttgct taataaatat
3661 ctgctggatt ctttcaaaaa aaaaaaaaaa a
//