LOCUS BC026308 2477 bp mRNA linear HUM 30-JUL-2005
DEFINITION Homo sapiens hypoxia inducible factor 3, alpha subunit, mRNA (cDNA
clone MGC:26043 IMAGE:4811824), complete cds.
ACCESSION BC026308
VERSION BC026308.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2477)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2477)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: j Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23065537.
FEATURES Location/Qualifiers
source 1..2477
/db_xref="H-InvDB:HIT000040187"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26043 IMAGE:4811824"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2477
/gene="HIF3A"
/gene_synonym="HIF-3A"
/gene_synonym="HIF-3A4"
/gene_synonym="IPAS"
/gene_synonym="MOP7"
/gene_synonym="PASD7"
/db_xref="GeneID:64344"
CDS 23..1114
/gene="HIF3A"
/gene_synonym="HIF-3A"
/gene_synonym="HIF-3A4"
/gene_synonym="IPAS"
/gene_synonym="MOP7"
/gene_synonym="PASD7"
/codon_start=1
/product="HIF3A protein"
/protein_id="AAH26308.1"
/db_xref="GeneID:64344"
/translation="MALGLQRARSTTELRKEKSRDAARSRRSQETEVLYQLAHTLPFA
RGVSAHLDKASIMRLTISYLRMHRLCAAGEWNQVGAGGEPLDACYLKALEGFVMVLTA
EGDMAYLSENVSKHLGLSQLELIGHSIFDFIHPCDQEELQDALTPQQTLSRRKVEART
ERCFSLRMKSTLTSRGRTLNLKAATWKVLNCSGHMRAYKPPAQTSPAGSPDSEPPLQC
LVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGCSAYE
YIHALDSDAVSKSIHTCMYPISPGAKPAATWPPADTRTPQLPIPQDALPPHLNTSSLL
PKPQGTVSFLAPSYPVPRSFSPHLPPWWP"
BASE COUNT 577 a 659 c 684 g 557 t
ORIGIN
1 tgggagcggc gactggcgag ccatggcgct ggggctgcag cgcgcaaggt cgaccacgga
61 gctgcgcaag gaaaagtccc gggatgcggc ccgcagccgg cgcagccagg agaccgaggt
121 gctgtaccag ctagctcaca cgctgccctt cgcccgcggc gtcagcgccc acctggacaa
181 ggcctctatc atgcgcctca ccatcagcta cctgcgcatg caccgcctct gcgccgcagg
241 ggagtggaac caggtgggag cagggggaga accactggat gcctgctacc tgaaggccct
301 ggagggcttc gtcatggtgc tcaccgccga gggagacatg gcttacctgt cggagaatgt
361 cagcaaacac ctgggcctca gtcagctgga gctcattgga cacagcatct ttgatttcat
421 ccacccctgt gaccaagagg agcttcagga cgccctgacc ccccagcaga ccctgtccag
481 gaggaaggtg gaggcccgca cggagcggtg cttctccttg cgcatgaaga gtacgctcac
541 cagccgcggg cgcaccctca acctcaaggc ggccacctgg aaggtgctga actgctctgg
601 acatatgagg gcctacaagc cacctgcgca gacttctcca gctgggagcc ctgactcaga
661 gcccccgctg cagtgcctgg tgctcatctg cgaagccatc ccccacccag gcagcctgga
721 gcccccactg ggccgagggg ccttcctcag ccgccacagc ctggacatga agttcaccta
781 ctgtgacgac aggattgcag aagtggctgg ctatagtccc gatgacctga tcggctgttc
841 cgcctacgag tacatccacg cgctggactc cgacgcggtc agcaagagca tccacacctg
901 tatgtatccc atttccccag gtgcgaagcc agctgccaca tggcccccag ctgacaccag
961 gaccccccag ctccccatac cccaggatgc actgcctccc cacctcaaca caagctccct
1021 gctccccaag ccccaaggaa ctgtctcctt ccttgccccc tcatacccag tccccagatc
1081 tttctctccc catttgcccc cttggtggcc ctgatccctc ccgatccccc tcctcagtgc
1141 tgagcaaggg ccaggcagta acagggcagt atcgcttcct ggcccggagt ggtggctacc
1201 tgtggaccca gacccaggcc acagtggtgt cagggggacg gggcccccag tcggagagta
1261 tcgtctgtgt ccatttttta atcaggtaag caggaggagg ggctggggtg gctgtgtgtg
1321 ggcctgatct gcatgtgtgg acaggtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgc
1381 gtatgagcat gcatgtgtat catgcataag tgtatgtgag ggagtgtgca cgtgtacaca
1441 tatgaggaat gtgtgtcacc atgtaaatgc cggtgtgtgt gtctgcatgg acacaggtat
1501 gtgtatgggt gtgtagactg ttaatttttt tttttttttt tttttgcgtg aacctctgct
1561 taagtggatt gttaattcaa attagaaagg ggtctttatt tggcctggca tggtggctca
1621 tgcctgtaat cctagcactt tgggaggctg aggtgggcgg attgcctgag ctcaggagtt
1681 cgaaaccagc ctgggcaaca tgacgaaatg ctgtttctgc taataatacc aaaaattagc
1741 cgggtgtggt gacacatgcc tgtgatccca actactcggg aggctgaggc acgagaatca
1801 ttagaacccg ggtggtggag gctgcagtga gccgagattg cgtcagtgca ctctggcctc
1861 ggcaacagag cgagactctg tctcaaacaa acaaacaaac aaacaaaagg actctatatt
1921 caagttaaaa taagaagtgt aacagaatca tggggtcttt tttgcttttt aaattttgat
1981 gtggctcacg cctgtaaatc ccaaggtgtt gggattacag gcgtgagcca ctgcacccgg
2041 cccatgttgt ggtttatatc agtagttcct ttgtaaatag tgaacagtat tccatggtat
2101 gaatagagca cagttttttt ttttatccat tcaccagtta gaagacattg ggctgtttcc
2161 aagtttgggt gattacaaaa aacagctact gtaaacattc tcatacaaga ttttatgaga
2221 tcacatgttt tcatttctct tgggtaaaca gctaggattg gaatggatgg gttatatagt
2281 aagtgtatat ttaatctaag aaactgccat ggctgggcac agtggctcac gcctgtaatc
2341 ccagtacttt gggaagccaa ggaaggagga tgactagagc ctctgaggtg aagaccagcc
2401 tgggcaaagt ggttaagact caaccgcaaa aaaagaaaaa cagaaaacct gaaaacaaac
2461 caaaaaaaaa aaaaaaa
//