LOCUS BC026171 2533 bp mRNA linear HUM 08-DEC-2006
DEFINITION Homo sapiens family with sequence similarity 47, member A, mRNA
(cDNA clone MGC:27003 IMAGE:4827969), complete cds.
ACCESSION BC026171
VERSION BC026171.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2533)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2533)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC026171.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: c Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42821113.
FEATURES Location/Qualifiers
source 1..2533
/db_xref="H-InvDB:HIT000040126"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:27003 IMAGE:4827969"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2533
/gene="FAM47A"
/gene_synonym="MGC27003"
/db_xref="GeneID:158724"
/db_xref="HGNC:HGNC:29962"
CDS 37..2373
/gene="FAM47A"
/gene_synonym="MGC27003"
/codon_start=1
/product="FAM47A protein"
/protein_id="AAH26171.1"
/db_xref="GeneID:158724"
/db_xref="HGNC:HGNC:29962"
/translation="MGDQRLQDWLRSPGMDSKPWYCNKRPSKCFAKCKHRRLRFPPMD
TQNWVLVKEGMDDFRYGCPSPEDTLVCRRDEFLLPKISLRGPQADPKSGQKKLLKKAA
LFSKLSPAQLARKAFVEQVEAQLMAKHPLAMYPNLGEDMPPDLLLQVLKHLDPERELE
DAWACCETQEKTTEVPTEPGKHPCGEFCLKPPETPVSHLLPEPPETGVSHLSPEPPKT
PVSSLRPEPPETGESHLRPEPPETGVSHIRPGPPITRRRSSLLRQLLKLDSERKLEDA
RAPCEGREKTTDEPTEPGKYPCGKFCPRPFETPLSHLRQEPPKTPVSSLRPEPPETGE
SHLRLEHSKTRRGSSLRSEPSETGVSRLRLAPPKTRRGSSLHAEPSKTGVSHLSPEPP
KTEVSHLHPVPPKTGVCHLRLEPPDTSQVSNLLLYILKVLDSGRTLKDVWDRCEARVK
KTKEPTEPHKSPCGEPCLQPPETQVSHPHPEHPKTRRRSSLHSQPPKTRRTSSLRSEP
PKTRRTSSLGPEPPKTRRVSSLRPELPKSRRVSSLHPEPPKAPESHQFSEPPKIRASY
IKELLQEDTPSTKECVSDSLQYRYTSEKLREFFKWAGDLGADEESIRNLFDFTPKYRA
THEDQKFKKVKECSSELKYSMELDEKDEDKFFSQEKYWGRKFHTPSNSYTAQRVKMKY
GAWYLKPKLWKKLRSDEPLIDPKLLLKKPDEPDVLDDLYGPIAFKDFILSKGYEMPGI
IQRLFARRGWTYDSVKTPIQRAMIFYKYKEIVEASEED"
BASE COUNT 640 a 731 c 628 g 534 t
ORIGIN
1 agtagctgga gacgtggcac cacagcgagg gccaccatgg gggaccagag gctgcaggac
61 tggctgaggt ccccgggcat ggactccaag ccctggtact gtaacaaacg gccttccaag
121 tgcttcgcga agtgcaagca caggcgcctg aggttcccac ccatggacac ccagaactgg
181 gtacttgtga aggagggcat ggacgacttc cgctacggct gtccgtctcc cgaagatact
241 ctcgtttgtc gccgtgacga gtttttactc cccaaaatat ctctcagagg tccccaagct
301 gaccccaaaa gcgggcagaa aaagctgctc aagaaagcgg ccctattttc caagctctct
361 ccagcccagc tagcacggaa ggcgttcgta gagcaagtgg aagcccagct aatggccaag
421 catcccttgg ccatgtaccc caatctggga gaagatatgc ctccagatct cctactacag
481 gtgctgaaac acctggatcc tgagagggag ctggaggacg cttgggcttg ttgtgagacc
541 caggagaaga caacagaggt acccactgag cctggtaaac atccctgtgg ggaattctgc
601 ctgaagcctc ccgagactcc ggtgtcccat ctcctcccag agcctcccga gactggagtg
661 tcccatctaa gcccggagcc tcccaagact ccggtgtcca gtctccgccc ggagcctcct
721 gagactggag agtcccatct ccgcccggag cctccagaga ctggagtgtc ccatatccgc
781 ccggggcctc ccatcactcg tcggagatcc agtctcctac gacagctgct gaaactggat
841 tctgagagga agctggaaga cgcacgggct ccttgtgagg gccgggagaa gacaactgac
901 gaacccacag agcctggtaa atacccttgt gggaaattct gtcctcggcc tttcgagact
961 ccactgtccc atctccgcca ggagcctccc aagactccgg tgtccagtct ccgcccggag
1021 cctccggaga ctggggagtc ccatctccgc ctagagcatt ccaagactcg tcgggggtcc
1081 agtctccgct cggagccttc cgagactgga gtgtcccgtc tccgcctagc gcctcccaag
1141 actcgtcggg ggtccagtct ccacgcggag ccttccaaga ctggagtgtc ccatctcagc
1201 ccggagcctc ccaagactga agtgtctcat ctccacccag tgcctcccaa gactggagtg
1261 tgccatctcc gcctggaacc tcccgacact agtcaggtgt ccaatctcct actatacata
1321 ctgaaagtgc tggattctgg gaggacgctg aaggacgtat gggatcgttg tgaggcccgg
1381 gtgaagaaaa ctaaggaacc caccgagcct cataaatccc cttgtgggga accctgcctg
1441 cagcctcccg agactcaggt gtcccatccc cacccggaac atcccaagac acgtcggagg
1501 tccagtctcc actcgcagcc tcccaagact cgtcggacgt ccagtctccg ctcggagcct
1561 cccaagactc gtcggacgtc cagtctcggt ccggagcctc ccaagactcg tcgagtgtcc
1621 agtctccgcc cggagcttcc caagagtcgt cgggtgtcca gtctccaccc ggagcctccc
1681 aaagctccag agtcccatca attctcggag cctcccaaga ttcgagcatc ctacataaaa
1741 gaactgcttc aggaagatac accaagcaca aaagagtgcg tttctgactc tcttcaatat
1801 agatacacat cggaaaaact ccgtgaattc ttcaagtggg ctggagacct gggagctgat
1861 gaagaatcca tcaggaatct gtttgacttt acccccaagt acagagcaac ccatgaggac
1921 caaaagttta agaaagtaaa ggagtgttcc tcagagctga agtacagcat ggagctagat
1981 gaaaaggatg aggacaaatt cttctcacag gaaaaatact ggggcaggaa attccacacg
2041 ccatcgaatt cttataccgc acagcgtgtg aagatgaagt atggagcatg gtacctcaag
2101 cctaagttgt ggaaaaagct aagaagtgat gaacctttga ttgaccccaa gctcttactt
2161 aaaaagcctg atgaacctga cgttcttgac gatctttatg gaccaattgc ctttaaggat
2221 ttcattctaa gcaagggcta tgaaatgcct ggcatcattc aaaggctgtt tgccaggagg
2281 ggatggactt atgactctgt taagactcct attcaacgtg caatgatatt ttacaagtac
2341 aaagaaatcg tagaggcatc ggaagaagat taggcagttt tcaatttact actcaattgg
2401 gtatttcttg ctctcatttt aatcatcaat cataatttat gatgactggc cccgtggatg
2461 cacaactttg gcaacatctg taaattcaat acctaatgtt tatcaatatt tcttaacgaa
2521 aaaaaaaaaa aaa
//