LOCUS BC026119 2320 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens contactin 4, mRNA (cDNA clone MGC:33615
IMAGE:4826091), complete cds.
ACCESSION BC026119
VERSION BC026119.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2320)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2320)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: n Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28373125.
FEATURES Location/Qualifiers
source 1..2320
/db_xref="H-InvDB:HIT000040113"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33615 IMAGE:4826091"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2320
/gene="CNTN4"
/gene_synonym="AXCAM"
/gene_synonym="BIG-2"
/gene_synonym="CNTN4A"
/gene_synonym="MGC33615"
/db_xref="GeneID:152330"
/db_xref="HGNC:HGNC:2174"
/db_xref="MIM:607280"
CDS 74..2167
/gene="CNTN4"
/gene_synonym="AXCAM"
/gene_synonym="BIG-2"
/gene_synonym="CNTN4A"
/gene_synonym="MGC33615"
/codon_start=1
/product="contactin 4"
/protein_id="AAH26119.1"
/db_xref="GeneID:152330"
/db_xref="HGNC:HGNC:2174"
/db_xref="MIM:607280"
/translation="MEENVFWECKANGRPKPTYKWLKNGEPLLTRDRIQIEQGTLNIT
IVNLSDAGMYQCLAENKHGVIFSNAELSVIAVGPDFSRTLLKRVTLVKVGGEVVIECK
PKASPKPVYTWKKGRDILKENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASS
TGNLVVKDPTRVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWSFNGHLIDFDRDG
DHFERVGGDSAGDLMIRNIQLKHAGKYVCMVQTSVDRLSAAADLIVRGPPGPPEAVTI
DEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGWQAVSTVPELIDGKTFTATVVG
LNPWVEYEFRTVAANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSELVITWE
TVPEELQNGRGFGYVVAFRPYGKMIWMLTVLASADASRYVFRNESVHPFSPFEVKVGV
FNNKGEGPFSPTTVVYSAEEEPTKPPASIFARSLSATDIEVFWASPLEKNRGRIQGYE
VKYWRHEDKEENARKIRTVGNQTSTKITNLKGSVLYHLAVKAYNSAGTGPSSATVNVT
TRKPPPSQPPGNIIWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTSVIET
NKTSVELSLPFDEDYIIEIKPFSDGGDGSSSEQIRIPKISNAYARGSGASTSNACTLS
AISTIMISLTARSSL"
BASE COUNT 734 a 481 c 543 g 562 t
ORIGIN
1 agcggatact agatggaggc tttgatttgc tcaacctaat tggattcaaa aaataaatga
61 tattcacgtg gccatggaag aaaatgtctt ttgggaatgt aaagcaaatg gaaggcctaa
121 gcctacatac aagtggctaa aaaatggcga acctctgcta actcgggata gaattcaaat
181 tgagcaagga acactcaaca taacaatagt gaacctctca gatgctggca tgtatcagtg
241 tttggcagag aataaacatg gagttatctt ttccaacgca gagcttagtg ttatagctgt
301 aggtccagat ttttcaagaa cactcttgaa aagagtaact cttgtcaaag tgggaggtga
361 agttgtcatt gagtgtaagc caaaagcgtc tccaaaacct gtttacacct ggaagaaagg
421 aagggatata ttaaaagaaa atgaaagaat taccatttct gaagatggaa acctcagaat
481 catcaacgtt actaaatcag acgctgggag ttatacctgt atagccacta accattttgg
541 aactgctagc agtactggaa acttggtagt gaaagatcca acaagggtaa tggtaccccc
601 ttccagtatg gatgtcactg ttggagagag tattgtttta ccgtgccagg taacgcatga
661 tcactcgcta gacatcgtgt ttacttggtc atttaatgga cacctgatag actttgacag
721 agatggggac cactttgaaa gagttggagg ggattcagct ggtgatttga tgatccgaaa
781 catccaactg aagcatgctg ggaaatatgt ctgcatggtc caaacaagtg tggacaggct
841 atctgctgct gcagacctga ttgtaagagg tcctccaggt cccccagagg ctgtgacaat
901 agacgaaatc acagatacca ctgctcagct ctcctggaga cccgggcctg acaatcacag
961 ccccatcacc atgtatgtca ttcaagccag gactccgttc tccgtgggct ggcaagcagt
1021 cagtacagtc ccagaactca ttgatgggaa gacattcaca gcgaccgtgg tgggtttgaa
1081 cccttgggtt gaatatgaat tccgcacagt tgcagccaac gtgattggga ttggggagcc
1141 cagccgcccc tcagagaaac ggagaacaga agaagctctc cccgaagtca caccagcgaa
1201 tgtcagtggt ggcggaggca gcaaatctga actggttata acctgggaga cggtccctga
1261 ggaattacag aatggtcgtg gctttggtta tgtggtggcc ttccggccct acggtaaaat
1321 gatctggatg ctgacagtgc tggcctcagc tgacgcctct agatacgtgt tcaggaatga
1381 gagcgtgcac cccttctctc cctttgaggt taaagtaggt gtcttcaaca acaaaggaga
1441 aggccctttc agtcccacca cggtggtgta ttctgcagaa gaagaaccca ccaaaccacc
1501 agccagtatc tttgccagaa gtctttctgc cacagatatt gaagttttct gggcctcccc
1561 actggagaag aatagaggac gaatacaagg ttatgaggtt aaatattgga gacatgaaga
1621 caaagaagaa aatgctagaa aaatacgaac agttggaaat cagacatcaa caaaaatcac
1681 gaacttaaaa ggcagtgtgc tgtatcactt agctgtcaag gcatataatt ctgctgggac
1741 aggcccctct agtgcaacag tcaatgtgac aacccgaaag ccaccaccaa gtcaaccccc
1801 cggaaacatc atatggaatt catcagactc caaaattatc ctgaattggg atcaagtgaa
1861 ggccctggat aatgagtcgg aagtaaaagg atacaaagtc ttgtacagat ggaacagaca
1921 aagcagcaca tctgtcattg aaacaaataa aacatcggtg gagctttctt tgcctttcga
1981 tgaagattat ataatagaaa ttaagccatt cagcgacgga ggagatggca gcagcagtga
2041 acaaattcga attccaaaga tatcaaatgc ctacgcgaga ggatctgggg cttccacttc
2101 gaatgcatgt acgctgtcag ccatcagtac aataatgatt tccctcacag ctaggtccag
2161 tttatgacaa aagttatctg aaggacttgc tgtttataat ataagcaaca tttagctagt
2221 tgttttgaag acacccagta ctaagtaata ttgttgttca agtacatctt attactggaa
2281 taaaaatgtt ttttgcttct ttaaaaaaaa aaaaaaaaaa
//