LOCUS BC026036 2465 bp mRNA linear HUM 02-MAR-2004
DEFINITION Homo sapiens cell division cycle and apoptosis regulator 1, mRNA
(cDNA clone IMAGE:5020111), partial cds.
ACCESSION BC026036
VERSION BC026036.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2465)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2465)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC026036.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: m Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2465
/db_xref="H-InvDB:HIT000091164"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5020111"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>2465
/gene="CCAR1"
/gene_synonym="CARP-1"
/gene_synonym="CARP1"
/gene_synonym="FLJ10590"
/gene_synonym="FLJ10839"
/db_xref="GeneID:55749"
CDS 52..>2465
/gene="CCAR1"
/gene_synonym="CARP-1"
/gene_synonym="CARP1"
/gene_synonym="FLJ10590"
/gene_synonym="FLJ10839"
/codon_start=1
/product="CCAR1 protein"
/protein_id="AAH26036.1"
/db_xref="GeneID:55749"
/translation="MAQFGGQKNPPWATQFTATAVSQPAALGVQQPSLLGASPTIYTQ
QTALAAAGLTTQTPANYQLTQTAALQQQAAAAAAALQQQYSQPQQALYSVQQQLQQPQ
QTLLTQPAVALPTSLSLSTPQPTAQITVSYPTPRSSQQQTQPQKQRVFTGVVTKLHDT
FGFVDEDVFFQLSAVKGKTPQVGDRVLVEATYNPNMPFKWNAQRIQTLPNQNQSQTQP
LLKTPPAVLQPIAPQTTFGVQTQPQPQSLLQAQISAASITPLLQTQPQPLLQQPQQKA
GLLQPPVRIVSQPQPARRLDPPSRFSGRNDRGDQVPNRKDDRSRERERERRRSRERSP
QRKRSRERSPRRERERSPRRVRRVVPRYTVQFSKFSLDCPSCDMMELRRRYQNLYIPS
DFFDAQFTWVDAFPLSRPFQLGNYCNFYVMHREVESLEKNMAILDPPDADHLYSAKVM
LMASPSMEDLYHKSCALAEDPQELRDGFQHPARLVKFLVGMKGKDEAMAIGGHWSPSL
DGPDPEKDPSVLIKTAIRCCKALTGIDLSVCTQWYRFAEIRYHRPEETHKGRTVPAHV
ETVVLFFPDVWHCLPTRSEWETLSRGYKQQLVEKLQGERKEADGEQDEEEKDDGEAKE
ISTPTHWSKLDPKTMKVNDLRKELESRALSSKGLKSQLIARLTKQLKVEEQKEEQKEL
EKSEKEEDEDDDRKSEDDKEEEERKRQEEIERQRRERRYILPDEPAIIVHPNWAAKSG
KFDCSIMSLSVLLDYRLEDNKEHSFEVSLFAELFNEMLQRDFGVRIYKSLLSLPEKED
KKKKKK"
misc_feature 1960..2052
/gene="CCAR1"
/gene_synonym="CARP-1"
/gene_synonym="CARP1"
/gene_synonym="FLJ10590"
/gene_synonym="FLJ10839"
/note="SAP; Region: Putative DNA-binding (bihelical) motif
predicted to be involved in chromosomal organisation"
/db_xref="CDD:smart00513"
BASE COUNT 785 a 544 c 545 g 591 t
ORIGIN
1 gatcgatgct atagaagaca aacaagggaa ggtttttttt ccttttgcat catggctcaa
61 tttggaggac agaagaatcc gccatgggct actcagttta cagccactgc agtatcacag
121 ccagctgcac tgggtgttca acagccatca ctccttggag catctcctac catttataca
181 cagcaaactg cattggcagc agcaggcctt accacacaaa ctccagcaaa ctatcagtta
241 acacaaactg ctgcattgca gcaacaagcc gcagctgcag cagctgcatt acaacagcaa
301 tattcacaac ctcagcaggc cctgtatagt gtgcaacaac agttacagca accccagcaa
361 accctcttaa cacagccagc tgttgcactg cctacaagcc ttagcctgtc tactcctcag
421 ccaacagcac aaataactgt atcatatcca acaccaaggt ccagtcaaca gcaaacccag
481 cctcagaagc agcgtgtttt cacaggggtg gttacaaaac tacatgatac atttggattt
541 gtggatgaag atgtattctt tcagcttagt gctgtcaaag ggaaaacccc ccaagtaggt
601 gacagagtat tggttgaagc tacttataat cctaatatgc cttttaaatg gaatgcacag
661 agaattcaaa cactaccaaa tcagaatcag tcgcaaaccc agccattact gaagactcct
721 cctgctgtac ttcagccaat tgcaccacag acaacatttg gtgttcagac tcagccccag
781 ccccagtcac tgctgcaggc acagatttca gcagcttcta ttacaccact attgcagact
841 caaccacagc ccttattaca gcagcctcag caaaaagctg gtttattgca gcctcctgtt
901 cgtatagttt cacagccaca accggcacga cgattagatc ccccatcccg attttcagga
961 agaaatgaca gaggggatca agtgcctaac agaaaagatg atcgaagtcg tgagagagag
1021 agagaaagac gtagatcgag agaaagatca cctcagagga aacgttcccg ggaaagatct
1081 ccacgaagag agcgagagcg atcacctcgg agagttcgac gtgttgttcc acgttacaca
1141 gttcagtttt caaagttttc tttagattgt cccagttgtg acatgatgga actaaggcgc
1201 cgttatcaaa atttgtatat acctagtgac ttttttgatg ctcaatttac atgggtggat
1261 gctttccctt tgtcaagacc atttcagctg ggaaattact gcaattttta tgtaatgcac
1321 agagaagtag agtccttaga aaaaaatatg gccattcttg atccaccaga tgctgaccac
1381 ttatacagtg caaaggtaat gctgatggct agccctagta tggaagattt atatcataag
1441 tcatgtgctc ttgctgagga cccacaagaa cttcgagatg gattccaaca tcctgctaga
1501 cttgttaagt ttttagtggg catgaaaggc aaggatgaag ctatggccat tggaggccac
1561 tggtctcctt cgttggatgg accagaccca gaaaaagatc cctctgtgtt gattaagact
1621 gctattcgtt gttgtaaggc tctgacaggc attgatctaa gtgtgtgcac acaatggtac
1681 cgttttgcag agattcgcta ccatcgccct gaggagaccc acaaggggcg tacagttcca
1741 gctcatgtgg agacagtggt tttatttttc ccggatgttt ggcattgcct tcccacccgc
1801 tcagagtggg aaaccctctc ccgaggatac aagcagcagc tggtcgagaa gcttcagggt
1861 gaacgcaagg aggctgatgg agaacaggat gaagaagaga aggatgatgg tgaagctaaa
1921 gaaatttcta cacctaccca ttggtctaaa cttgatccaa agacaatgaa ggtaaatgac
1981 ctccgaaaag aattagaaag tcgagctctt agttccaaag gattaaaatc ccagttaata
2041 gcccgattga caaaacagct taaagtagag gaacaaaaag aagaacagaa ggagttagag
2101 aaatctgaaa aagaagagga tgaggatgat gataggaaat ctgaagacga taaagaggaa
2161 gaagaaagga aacgtcaaga ggaaatagaa cgccagcgtc gagaaagaag atatattttg
2221 cctgatgaac cggccatcat tgtacatcca aattgggctg caaaaagtgg caagtttgat
2281 tgtagcatca tgtctttgag tgtcctattg gactacagat tagaggataa taaagaacat
2341 tcatttgagg tttcattgtt tgcggaactt ttcaacgaaa tgcttcaaag agattttggt
2401 gtccgtatat acaaatcatt actgtctctt cctgagaaag aggacaaaaa aaaaaaaaaa
2461 aaaaa
//