LOCUS BC025968 3431 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens basic helix-loop-helix family, member e41, mRNA (cDNA
clone MGC:39365 IMAGE:4650325), complete cds.
ACCESSION BC025968
VERSION BC025968.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3431)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3431)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (18-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: f Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13540520.
FEATURES Location/Qualifiers
source 1..3431
/db_xref="H-InvDB:HIT000040044"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39365 IMAGE:4650325"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3431
/gene="BHLHE41"
/gene_synonym="DEC2"
/gene_synonym="SHARP-1"
/gene_synonym="SHARP1"
/db_xref="GeneID:79365"
/db_xref="HGNC:HGNC:16617"
/db_xref="MIM:606200"
CDS 292..1740
/gene="BHLHE41"
/gene_synonym="DEC2"
/gene_synonym="SHARP-1"
/gene_synonym="SHARP1"
/codon_start=1
/product="basic helix-loop-helix family, member e41"
/protein_id="AAH25968.1"
/db_xref="GeneID:79365"
/db_xref="HGNC:HGNC:16617"
/db_xref="MIM:606200"
/translation="MDEGIPHLQERQLLEHRDFIGLDYSSLYMCKPKRSMKRDDTKDT
YKLPHRLIEKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHLKALTAL
TEQQHQKIIALQNGERSLKSPIQSDLDAFHSGFQTCAKEVLQYLSRFESWTPREPRCV
QLINHLHAVATQFLPTPQLLTQQVPLSKGTGAPSAAGSAAAPCLERAGQKLEPLAYCV
PVIQRTQPSAELAAENDTDTDSGYGGEAEARPDREKGKGAGASRVTIKQEPPGEDSPA
PKRMKLDSRGGGSGGGPGGGAVAAAAALLGPDPAAAAALLRPDAALLSSLVAFGGGGG
APFPQPAAAAAPFCLPFCFLSPSAAAAYVQPFLDKSGLEKYLYPAAAAAPFPLLYPGI
PAPAAAAAAAAAAAAAAAAFPCLSSVLSPPPEKAGAAAATLLPHEVAPLGAPHPQHPH
GRTHLPFAGPREPGNPESSAQEDPSQPGKEAP"
BASE COUNT 910 a 892 c 848 g 781 t
ORIGIN
1 ctggtctggc cggcgacgcg cgtgccctgt ggccaaacac tgcctggagt gagagcaaac
61 taccagcgca gtggggccgg cgcgagtgtg cgtgtgtgtg cgtgtgtgtg tgcgagcgcg
121 gtggaggggg gggaccaact gcttcacact ttcaacactg cactgaagag ggagagcgag
181 agagagactg gagacgcaca gatcccccca aggtctccca agcctaccgt cccacagatt
241 attgtacaga gccccaaaaa tcgaaacaga ggaaacgaac agcagttgaa catggacgaa
301 ggaattcctc atttgcaaga gagacagtta ctggaacata gagattttat aggactggac
361 tattcctctt tgtatatgtg taaacccaaa aggagcatga aacgagacga caccaaggat
421 acctacaaat taccgcacag attaatagaa aagaaaagaa gagaccgaat taatgaatgc
481 attgctcagc tgaaagattt actgcctgaa catctgaaat tgacaactct gggacatctg
541 gagaaagctg tagtcttgga attaactttg aaacacttaa aagctttaac cgccttaacc
601 gagcaacagc atcagaagat aattgcttta cagaatgggg agcgatctct gaaatcgccc
661 attcagtccg acttggatgc gttccactcg ggatttcaaa catgcgccaa agaagtcttg
721 caatacctct cccggtttga gagctggaca cccagggagc cgcggtgtgt ccagctgatc
781 aaccacttgc acgccgtggc cacccagttc ttgcccaccc cgcagctgtt gactcaacag
841 gtccctctga gcaaaggcac cggcgctccc tcggccgccg ggtccgcggc cgccccctgc
901 ctggagcgcg cggggcagaa gctggagccc ctcgcctact gcgtgcccgt catccagcgg
961 actcagccca gcgccgagct cgccgccgag aacgacacgg acaccgacag cggctacggc
1021 ggcgaagccg aggcccggcc ggaccgcgag aaaggcaaag gcgcgggggc gagccgcgtc
1081 accatcaagc aggagcctcc cggggaggac tcgccggcgc ccaagaggat gaagctggat
1141 tcccgcggcg gcggcagcgg cggcggcccg gggggcggcg cggtggcggc ggcagccgcg
1201 cttctggggc ccgaccctgc cgccgcggcc gcgctgctga gacccgacgc cgccctgctc
1261 agctcgctgg tggcgttcgg cggaggcgga ggcgcgccct tcccgcagcc cgcggccgcc
1321 gcggccccct tctgcctgcc cttctgcttc ctctcgcctt ctgcagctgc cgcctacgtg
1381 cagcccttcc tggacaagag cggcctggag aagtatctgt acccggcggc ggctgccgcc
1441 ccgttcccgc tgctataccc cggcatcccc gccccggcgg cagccgcggc agccgccgcc
1501 gccgctgccg ccgccgccgc cgcgttcccc tgcctgtcct cggtgttgtc gccccctccc
1561 gagaaggcgg gcgccgccgc cgcgaccctc ctgccgcacg aggtggcgcc ccttggggcg
1621 ccgcaccccc agcacccgca cggccgcacc cacctgccct tcgccgggcc ccgcgagccg
1681 gggaacccgg agagctctgc tcaggaagat ccctcgcagc caggaaagga agctccctga
1741 atccttgcgt cccgaaggac ggaggttcaa gcagagtgag aagttaaaat acccttaagg
1801 aggttcaagc agagtgagaa gttaaaatac ccttaaggtc tttaagggag gaagtgtaat
1861 agatgcacga caggcataaa caagaacaac aaaacaggtg ttatgtgtac attcggagtt
1921 cctgttttgc tcatcccgca ccaccccacc ctccacacac taacatccct ttcttccccc
1981 caccagctgt aaaagatcct atgcgaaaga cactggctct tttttttaat cccccaaata
2041 aattttgccc ccttttaggc catgttccat tatctcttaa aattggaacc taattcgaga
2101 ggaagtaaga agggtctgtt ctgtggctga gctaggtgaa ccccggggta ggggaaagat
2161 gttaacacct ttgacgtctt tggagttgac atggaacagc aggtagttgt tatgtagagc
2221 tagttctcaa agctgccctg cctgttttag gaggcgttcc acaaacagat tgaggctctt
2281 ttagaattga atttactctt cagtattttc taatgttcag ctttctaaaa ggcatatatt
2341 tttcaaagaa gtgaggatgc agtttctcac gttgcaacct attctgaagt ggtttaaatg
2401 gtatctctta gtaacttgca ctcgttaaag aaacacggag ctgggccatc gtcagaacta
2461 agtcagggaa ggagatggat gagaaggcca gaatcattcc tagtacattt gctaacactt
2521 tattgagaaa ttgaccatga attaatggac tcatcttaat ttcttctaag tccatatata
2581 gatagatatc tatctgtaca gatttctatt tatccataga taggtatcta tacatacaca
2641 tctcaagtgc atctattccc actctcatta atccatcatg ttcctaaatt tttgtaatct
2701 tactgtaaaa aaaagtgcac tgaacttcaa aacaaaacaa aaaacaacaa caacaaaaaa
2761 caagtccaaa ctgatatatc ctatattctg ttaaaattca aaagtgaacg aaagcattta
2821 actggccagt tttgattgca aatgctgtaa agatatagaa tgaagtcctg tgaggccttc
2881 ctatctccaa gtctatgtat tttctggaga ccaaaccaga taccagataa tcacaaagaa
2941 agctttttta ataaggctta aaccaagacc ttgtctagat atttttagtt tgttgccaag
3001 gtagcactgt gagaaatctc acttggatgt tatgtaaggg gtgagacaca acagtctgac
3061 tatgagtgag gaaaatatct gggtcttttc gtcagtttgg tgcatttgct gctgctgttg
3121 ctactgtttg cctcaaacgc tgtgtttaaa caacgttaaa ctcttagcct acaaggtggc
3181 tcttatgtac atagttgtta atacatccaa ttaatgatgt ctgacatgct atttttgtag
3241 ggagaaaata tgtgctaatg atattttgag ttaaaatatc ttttggggag gatttgctga
3301 aaagttgcac ttttgttaca atgcttatgc ttggtacaag cttatgctgt cttaaattat
3361 tttaaaaaaa taaatactgt ctgtgagaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3421 aaaaaaaaaa a
//