LOCUS BC025963 1900 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain,
mRNA (cDNA clone MGC:39242 IMAGE:4842286), complete cds.
ACCESSION BC025963
VERSION BC025963.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1900)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1900)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (18-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: g Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4557232.
FEATURES Location/Qualifiers
source 1..1900
/db_xref="H-InvDB:HIT000040042"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39242 IMAGE:4842286"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1900
/gene="ACADS"
/gene_synonym="ACAD3"
/gene_synonym="SCAD"
/db_xref="GeneID:35"
/db_xref="HGNC:HGNC:90"
/db_xref="MIM:606885"
CDS 48..1286
/gene="ACADS"
/gene_synonym="ACAD3"
/gene_synonym="SCAD"
/codon_start=1
/product="acyl-Coenzyme A dehydrogenase, C-2 to C-3 short
chain"
/protein_id="AAH25963.1"
/db_xref="GeneID:35"
/db_xref="HGNC:HGNC:90"
/db_xref="MIM:606885"
/translation="MAAALLARASGPARRALCPRAWRQLHTIYQSVELPETHQMLLQT
CRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAM
EEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNG
SDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPMP
TPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIA
SQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAML
KDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYE
GTSEIQRLVIAGHLLRSYRS"
BASE COUNT 394 a 578 c 599 g 329 t
ORIGIN
1 gcgctcgcag cgggaggtcg cgaagcctgg gactgtgtct gtcgcccatg gccgccgcgc
61 tgctcgcccg ggcctcgggc cctgcccgca gagctctctg tcctagggcc tggcggcagt
121 tacacaccat ctaccagtct gtggaactgc ccgagacaca ccagatgttg ctccagacat
181 gccgggactt tgccgagaag gagttgtttc ccattgcagc ccaggtggat aaggaacatc
241 tcttcccagc ggctcaggtg aagaagatgg gcgggcttgg gcttctggcc atggacgtgc
301 ccgaggagct tggcggtgct ggcctcgatt acctggccta cgccatcgcc atggaggaga
361 tcagccgcgg ctgcgcctcc accggagtca tcatgagtgt caacaactct ctctacctgg
421 ggcccatctt gaagtttggc tccaaggagc agaagcaggc gtgggtcacg cctttcacca
481 gtggtgacaa aattggctgc tttgccctca gcgaaccagg gaacggcagt gatgcaggag
541 ctgcgtccac caccgcccgg gccgagggcg actcatgggt tctgaatgga accaaagcct
601 ggatcaccaa tgcctgggag gcttcggctg ccgtggtctt tgccagcacg gacagagccc
661 tgcaaaacaa gagcatcagt gccttcctgg tccccatgcc aacgcctggg ctcacgttgg
721 ggaagaaaga agacaagctg ggcatccggg gctcatccac ggccaacctc atctttgagg
781 actgtcgcat ccccaaggac agcatcctgg gggagccagg gatgggcttc aagatagcca
841 tgcaaaccct ggacatgggc cgcatcggca tcgcctccca ggccctgggc attgcccaga
901 ccgccctcga ttgtgctgtg aactacgctg agaatcgcat ggccttcggg gcgcccctca
961 ccaagctcca ggtcatccag ttcaagttgg cagacatggc cctggccctg gagagtgccc
1021 ggctgctgac ctggcgtgct gccatgctga aggataacaa gaagcctttc atcaaggagg
1081 cagccatggc caagctggcc gcctcggagg ccgcgaccgc catcagccac caggccatcc
1141 agatcctggg cggcatgggc tacgtgacag agatgccggc agagcggcac taccgcgacg
1201 cccgcatcac tgagatctac gagggcacca gcgaaatcca gcggctggtg atcgccgggc
1261 atctgctcag gagctaccgg agctgagccc gcggcggact gccccacgac tgcgggaagg
1321 cgcgggagcc aggggcctcc accccaaccc cggctcagag actgggcggc ccggcggggg
1381 ctccctgggg accccagatg ggctcagtgc tgccacccag atcagatcac atgggaatga
1441 ggccctccga ccattggcag ctccgcctct gggcctttcc gcctcctcac cactgtgcct
1501 caagttcctc atctaagtgg ccctggcctc ctgggggcgg ggttgtgggg gggctgagcg
1561 acactcaggg acacctcagt tgtcctcccg cgggccctgg tgccctggca tgaaggccca
1621 gtgcgacagg cccttggtgg ggtctgtctt ttccttgagg tcagaggtca ggagcagggc
1681 tggggtcagg atgacgaggc ctggggtcct ggtgttgggc aggtggtggg gctgggccat
1741 ggagctggcc cagaggcccc tcagcccttt gtaaagtctg atgaaggcag gggtggtgat
1801 tcatgctgtg tggctgactg tgggtaataa acacacctgt cccccaaaaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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