LOCUS BC025928 1184 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens retinitis pigmentosa 9 (autosomal dominant), mRNA
(cDNA clone MGC:23258 IMAGE:4903338), complete cds.
ACCESSION BC025928
VERSION BC025928.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1184)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1184)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (18-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: o Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42718019.
FEATURES Location/Qualifiers
source 1..1184
/db_xref="H-InvDB:HIT000091134"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23258 IMAGE:4903338"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1184
/gene="RP9"
/gene_synonym="PAP-1"
/db_xref="GeneID:6100"
/db_xref="HGNC:HGNC:10288"
/db_xref="MIM:607331"
CDS 19..684
/gene="RP9"
/gene_synonym="PAP-1"
/codon_start=1
/product="retinitis pigmentosa 9 (autosomal dominant)"
/protein_id="AAH25928.2"
/db_xref="GeneID:6100"
/db_xref="HGNC:HGNC:10288"
/db_xref="MIM:607331"
/translation="MSSRPGREDVGAAGARRPREPPEQELQRRREQKRRRHDAQQLQQ
LKHLESFYEKPPPGLIKEDETKPEDCIPDVPGNEHAREFLAHAPTKGLWMPLGKEVKV
MQCWRCKRYGHRTGDKECPFFIKGNQKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQL
KQLLEDSTSDEDRSSSSSSEGKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSKSNEGS
DSE"
BASE COUNT 400 a 250 c 313 g 221 t
ORIGIN
1 ggcgctgcgg gggctgacat gtcgtcccgg cctgggcgcg aggacgtggg ggctgcgggc
61 gcgcggcggc cgcgtgagcc gccggagcag gagctgcagc gacgtcggga gcagaagcgg
121 cggcgacacg acgcgcagca gctgcagcag ctcaagcacc tggagtcctt ttacgaaaaa
181 cctcctcctg ggcttatcaa ggaagatgag actaagccag aagattgcat accagatgta
241 ccaggcaatg aacacgccag ggaatttctg gctcatgcac caactaaagg actttggatg
301 ccactgggga aagaagtcaa agttatgcag tgttggcgtt gcaaacgcta tggtcaccga
361 acgggtgaca aagaatgccc tttctttatc aaaggcaacc aaaagttaga gcagttcaga
421 gtggcacatg aagatcccat gtatgacatc atacgagaca ataaacgaca tgaaaaggac
481 gtaaggatac agcagttaaa acagttactg gaggattcta cctcagatga agataggagc
541 agctccagtt cctctgaagg taaagagaaa cacaagaaaa agaagaagaa agaaaagcat
601 aagaaaagga agaaagaaaa gaaaaagaag aaaaaacgga agcacaaatc ttccaagtca
661 aatgagggtt ctgactcaga gtgacaagga tgtgacttgt tcaacattct cttctcaaac
721 actgaccaag gaacagagga agatgcagtc agagaaagca gcaggataga gacgccgaga
781 gaggagtata tgtgggtcac agcagtgagc tcccacccgc cttgcagtga agatgtgacc
841 ccaggagagg gagtgtctcc ttccaggtgc tagctctgga cagcagctga ttttaggcag
901 gaaagtttct tcatcgttgt cctccctgct ggtcacatga gtttacgatt cctttgaagt
961 gtctcccaca gggtggcagg actgggagaa tctctgaggc gtgtcttcca ggccctccca
1021 cagcttgtgc cctccacagt gtggactcag gtcccataga catcaggctg gagtcttctc
1081 tgttgttgag aataataaaa gctcattatt tattttttaa aaaaaaaaaa aaaaaaaaaa
1141 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//