LOCUS BC025843 2516 bp mRNA linear HUM 30-MAR-2005
DEFINITION Homo sapiens L1 cell adhesion molecule, mRNA (cDNA clone
IMAGE:4907142), partial cds.
ACCESSION BC025843
VERSION BC025843.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2516)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2516)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: l Column: 18.
FEATURES Location/Qualifiers
source 1..2516
/db_xref="H-InvDB:HIT000091133"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4907142"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2516
/gene="L1CAM"
/gene_synonym="CAML1"
/gene_synonym="CD171"
/gene_synonym="HSAS"
/gene_synonym="HSAS1"
/gene_synonym="MASA"
/gene_synonym="MIC5"
/gene_synonym="N-CAML1"
/gene_synonym="S10"
/gene_synonym="SPG1"
/db_xref="GeneID:3897"
/db_xref="MIM:308840"
CDS <1..1352
/gene="L1CAM"
/gene_synonym="CAML1"
/gene_synonym="CD171"
/gene_synonym="HSAS"
/gene_synonym="HSAS1"
/gene_synonym="MASA"
/gene_synonym="MIC5"
/gene_synonym="N-CAML1"
/gene_synonym="S10"
/gene_synonym="SPG1"
/codon_start=3
/product="L1CAM protein"
/protein_id="AAH25843.1"
/db_xref="GeneID:3897"
/db_xref="MIM:308840"
/translation="EDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHLRGYNVTY
WREGSQRKHSKRHIHKDHVVVPANTTSVILSGLRPYSSYHLEVQAFNGRGSGPASEFT
FSTPEGVPGHPEALHLECQSNTSLLLRWQPPLSHNGVLTGYVLSYHPLDEGGKGQLSF
NLRDPELRTHNLTDLSPHLRYRFQLQATTKEGPGEAIVREGGTMALSGISDFGNISAT
AGENYSVVSWVPKEGQCNFRFHILFKALGEEKGGASLSPQYVSYNQSSYTQWDLQPDT
DYEIHLFKERMFRHQMAVKTNGTGRVRLPPAGFATEGWFIGFVSAIILLLLVLLILCF
IKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESDNEEKAFGSSQPSLNGDIK
PLGSDDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAAGGNDSSGATSPINPAVALE"
BASE COUNT 562 a 792 c 680 g 482 t
ORIGIN
1 gagaggacta cccccaggca atccctgagc tggaaggcat tgaaatcctc aactcaagtg
61 ccgtgctggt caagtggcgg ccggtggacc tggcccaggt caagggccac ctccgcggat
121 acaatgtgac gtactggagg gagggcagtc agaggaagca cagcaagaga catatccaca
181 aagaccatgt ggtggtgccc gccaacacca ccagtgtcat cctcagtggc ttgcggccct
241 atagctccta ccacctggag gtgcaggcct ttaacgggcg aggatcgggg cccgccagcg
301 agttcacctt cagcacccca gagggagtgc ctggccaccc cgaggcgttg cacctggagt
361 gccagtcgaa caccagcctg ctgctgcgct ggcagccccc actcagccac aacggcgtgc
421 tcaccggcta cgtgctctcc taccaccccc tggatgaggg gggcaagggg caactgtcct
481 tcaaccttcg ggaccccgaa cttcggacac acaacctgac cgatctcagc ccccacctgc
541 ggtaccgctt ccagcttcag gccaccacca aagagggccc tggtgaagcc atcgtacggg
601 aaggaggcac tatggccttg tctgggatct cagattttgg caacatctca gccacagcgg
661 gtgaaaacta cagtgtcgtc tcctgggtcc ccaaggaggg ccagtgcaac ttcaggttcc
721 atatcttgtt caaagccttg ggagaagaga agggtggggc ttccctttcg ccacagtatg
781 tcagctacaa ccagagctcc tacacgcagt gggacctgca gcctgacact gactacgaga
841 tccacttgtt taaggagagg atgttccggc accaaatggc tgtgaagacc aatggcacag
901 gccgcgtgag gctccctcct gctggcttcg ccactgaggg ctggttcatc ggctttgtga
961 gtgccatcat cctcctgctc ctcgtcctgc tcatcctctg cttcatcaag cgcagcaagg
1021 gcggcaaata ctcagtgaag gataaggagg acacccaggt ggactctgag gcccgaccga
1081 tgaaagatga gaccttcggc gagtacaggt ccctggagag tgacaacgag gagaaggcct
1141 ttggcagcag ccagccatcg ctcaacgggg acatcaagcc cctgggcagt gacgacagcc
1201 tggccgatta tgggggcagc gtggatgttc agttcaacga ggatggttcg ttcattggcc
1261 agtacagtgg caagaaggag aaggaggcgg cagggggcaa tgacagctca ggggccactt
1321 cccccatcaa ccctgccgtg gccctagaat agtggagtcc aggacaggag atgctgtgcc
1381 cctggccttg ggatccaggc ccctccctct ccagcaggcc catgggaggc tggagttggg
1441 gcagaggaga acttgctgcc tcggatcccc ttcctaccac ccggtcccca ctttattgcc
1501 aaaacccagc tgcacccctt cctgggcaca cgctgctctg ccccagcttg ggcagatctc
1561 ccacatgcca ggggcctttg ggtgctgttt tgccagccca tttgggcaga gaggctgtgg
1621 tttgggggag aagaagtagg ggtggcccga aagggtctcc gaaatgctgt ctttcttgct
1681 ccctgactgg gggcagacat ggtggggtct cctcaggacc agggttggca ccttccccct
1741 cccccagcca ctccccagcc agcctggctg ggactgggaa cagaactcgg tgtccccacc
1801 atctgctgtc ttttctttgc catctctgct ccaaccggga tgggagccgg gcaaactggc
1861 cgcgggggca ggggaggcca tctggagagc ccagagtccc cccactccca gcatcgcact
1921 ctggcagcac cgcctcttcc cgccgcccag cccaccccat ggccggcttt caggagctcc
1981 atacacacgc tgccttcggt acccaccaca caacatccaa gtggcctccg tcactacctg
2041 gctgcggggc gggcacacct cctcccactg cccactggcc ggcctcttcc agccgccccc
2101 accccccagg accccttagc agccctgccc tccctatcgt ctgaacagtt gtcttcctca
2161 gcctcctccc gcccccacct tgggaatgta aatacaccgt gactttgaaa gtttgtaccc
2221 ctgtccttcc ctttacgcca ctagtgtgta ggcagatgtc tgagtcccta ggtggtttct
2281 aggattgata gcaattagct ttgatgaacc catcccagga aaaataaaaa cagacaaaaa
2341 aaaaggaaag attggttctc ccagcactgc tcagcagcca cagcctccct gtatgcctgt
2401 gcttggtcta ctgataagcc ctctacaaaa aaacaaaagt atatatatat atgtacataa
2461 tatcagaatt ataacaggca aataaaacct gaaaatcaaa aaaaaaaaaa aaaaaa
//