LOCUS BC025711 1632 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens NK2 transcription factor related, locus 5
(Drosophila), mRNA (cDNA clone MGC:34495 IMAGE:5225103), complete
cds.
ACCESSION BC025711
VERSION BC025711.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1632)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1632)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: m Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 49574504.
FEATURES Location/Qualifiers
source 1..1632
/db_xref="H-InvDB:HIT000039977"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34495 IMAGE:5225103"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1632
/gene="NKX2-5"
/gene_synonym="CSX1"
/gene_synonym="NKX2.5"
/db_xref="GeneID:1482"
/db_xref="HGNC:HGNC:2488"
/db_xref="MIM:600584"
CDS 108..1082
/gene="NKX2-5"
/gene_synonym="CSX1"
/gene_synonym="NKX2.5"
/codon_start=1
/product="NK2 transcription factor related, locus 5
(Drosophila)"
/protein_id="AAH25711.1"
/db_xref="GeneID:1482"
/db_xref="HGNC:HGNC:2488"
/db_xref="MIM:600584"
/translation="MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPS
SCMLAAFKPEAYAGPEAAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDP
AKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQ
RYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRI
AVPVLVRDGKPCLGDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPA
GPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW"
BASE COUNT 346 a 544 c 487 g 255 t
ORIGIN
1 gacgggtgcg cgggcgggcg gcggcaccat gcagggaagc tgccaggggc cgtgggcagc
61 gccgctttct gccgcccacc tggcgctgtg agactggcgc tgccaccatg ttccccagcc
121 ctgctctcac gcccacgccc ttctcagtca aagacatcct aaacctggaa cagcagcagc
181 gcagcctggc tgccgccgga gagctctctg cccgcctgga ggcgaccctg gcgccctcct
241 cctgcatgct ggccgccttc aagccagagg cctacgctgg gcccgaggcg gctgcgccgg
301 gcctcccaga gctgcgcgca gagctgggcc gcgcgccttc accggccaag tgtgcgtctg
361 cctttcccgc cgcccccgcc ttctatccac gtgcctacag cgaccccgac ccagccaagg
421 accctagagc cgaaaagaaa gagctgtgcg cgctgcagaa ggcggtggag ctggagaaga
481 cagaggcgga caacgcggag cggccccggg cgcgacggcg gaggaagccg cgcgtgctct
541 tctcgcaggc gcaggtctat gagctggagc ggcgcttcaa gcagcagcgg tacctgtcgg
601 cccccgaacg cgaccagctg gccagcgtgc tgaaactcac gtccacgcag gtcaagatct
661 ggttccagaa ccggcgctac aagtgcaagc ggcagcggca ggaccagact ctggagctgg
721 tggggctgcc cccgccgccg ccgccgcctg cccgcaggat cgcggtgcca gtgctggtgc
781 gcgatggcaa gccatgccta ggggactcgg cgccctacgc gcctgcctac ggcgtgggcc
841 tcaatcccta cggttataac gcctaccccg cctatccggg ttacggcggc gcggcctgca
901 gccctggcta cagctgcact gccgcttacc ccgccgggcc ttccccagcg cagccggcca
961 ctgccgccgc caacaacaac ttcgtgaact tcggcgtcgg ggacttgaat gcggttcaga
1021 gccccgggat tccgcagagc aactcgggag tgtccacgct gcatggtatc cgagcctggt
1081 agggaaggga cccgcgtggc gcgaccctga ccgatcccac ctcaacagct ccctgactct
1141 cggggggaga aggggctccc aacatgaccc tgagtcccct ggattttgca ttcactcctg
1201 cggagaccta ggaacttttt ctgtcccacg cgcgtttgtt cttgcgcacg ggagagtttg
1261 tggcggcgat tatgcagcgt gcaatgagtg atcctgcagc ctggtgtctt agctgtcccc
1321 ccaggagtgc cctccgagag tccatgggca cccccggttg gaactgggac tgagctcggg
1381 cacgcagggc ctgagatctg gccgcccatt ccgcgagcca gggccgggcg cccgggcctt
1441 tgctatctcg ccgtcgcccg cccacgcacc cacccgtatt tatgttttta cctattgctg
1501 taagaaatga cgatcccctt cccattaaag agagtgcgtt gaaaaaaaaa aaaaaaaaaa
1561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1621 aaaaaaaaaa aa
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