LOCUS BC025678 1444 bp mRNA linear HUM 20-JUL-2004
DEFINITION Homo sapiens non imprinted in Prader-Willi/Angelman syndrome 1,
mRNA (cDNA clone IMAGE:5203620), partial cds.
ACCESSION BC025678
VERSION BC025678.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1444)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1444)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: e Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21389396.
FEATURES Location/Qualifiers
source 1..1444
/db_xref="H-InvDB:HIT000039952"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5203620"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1444
/gene="NIPA1"
/gene_synonym="FSP3"
/gene_synonym="MGC35570"
/gene_synonym="SPG6"
/db_xref="GeneID:123606"
/db_xref="MIM:608145"
CDS <1..836
/gene="NIPA1"
/gene_synonym="FSP3"
/gene_synonym="MGC35570"
/gene_synonym="SPG6"
/codon_start=3
/product="NIPA1 protein"
/protein_id="AAH25678.2"
/db_xref="GeneID:123606"
/db_xref="MIM:608145"
/translation="ARRASRSGTSYLTDIVWWAGTIAMAVGQIGNFLAYTAVPTVLVT
PLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKSESVTTQAELEE
KLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPSTKGIGLA
AQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFGAIYYVVFTT
LVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFNFNLGEMNKSNMKT
D"
BASE COUNT 388 a 331 c 357 g 368 t
ORIGIN
1 cggcgcgccg ggcttcgcgc tccggtactt cctatttaac agacattgtg tggtgggctg
61 gcacaatcgc aatggctgtt ggccagattg gaaacttcct ggcttacacg gcggtcccca
121 cggtcctggt aacccccctg ggcgcccttg gagtaccgtt cgggtccatt ttagcttcct
181 atctcctgaa ggaaaagctc aacatcttgg gcaagttggg gtgcctgcta agctgtgcag
241 gctccgtcgt gctgattatc cactccccaa agtctgagag tgtgacaact caggctgagc
301 tggaggaaaa gctgaccaat ccagtgtttg tgggctacct gtgcatcgtg ctgctcatgc
361 tgctgctgct catcttctgg atcgcgccgg cccatgggcc caccaacatc atggtctaca
421 tcagcatctg ctccttgctg ggcagtttca ccgtgccttc caccaagggc atcgggctgg
481 cggcccaaga catcttgcat aacaacccgt ccagtcagag agccctctgc ctgtgcctgg
541 tactcctggc cgtgctcggc tgcagcatca tcgtccagtt caggtacatc aacaaggcgc
601 tggagtgctt cgactcctcg gtgttcgggg ccatctacta cgtcgtgttt accacgctgg
661 tcctgctggc ctcagccatc ctcttccggg agtggagcaa cgtgggcctg gtggacttct
721 tggggatggc ctgtggattc acgaccgtct ccgtggggat tgtccttata caggtgttca
781 aagagttcaa tttcaacctt ggggagatga acaaatctaa tatgaaaaca gactagattg
841 caataggagc ttggatggtt cgaggaatag gcattggagg tggtttctgg ccgtgattgg
901 atgtgaagta gaagaggtcc tcgatcatgg tgttagaatt gactggatag taacaggtgg
961 tctggtggat agcggggagc atggctcagc accagagcag aggcccagcc agccctctgc
1021 agcccaaacg tccccaacgg ttgcctggca ccatctctct ctgatgagac gaatctcatt
1081 ttcatttcca ttaacctgga agctttcatg aatattctct tcttttaaaa cattttaaca
1141 ttatttaaac agaaaaagat gggctctttc tggttagttg ttacatgata gcagagatat
1201 ttttacttag attactttgg gaatgagaga ttgttgtctt gaactctggc actgtacagt
1261 gaatgtgtct gtagttgtgt tagtttgcat taagcatgta taacattcaa gtatgtcatc
1321 caaataagag gcatatacat tgaattgtta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1381 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1441 aaaa
//