LOCUS BC025311 2735 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens hedgehog interacting protein, mRNA (cDNA clone
MGC:39295 IMAGE:4122618), complete cds.
ACCESSION BC025311
VERSION BC025311.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2735)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2735)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: c Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20143972.
FEATURES Location/Qualifiers
source 1..2735
/db_xref="H-InvDB:HIT000050893"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39295 IMAGE:4122618"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2735
/gene="HHIP"
/gene_synonym="FLJ20992"
/gene_synonym="HIP"
/db_xref="GeneID:64399"
/db_xref="HGNC:HGNC:14866"
/db_xref="MIM:606178"
CDS 507..2609
/gene="HHIP"
/gene_synonym="FLJ20992"
/gene_synonym="HIP"
/codon_start=1
/product="hedgehog interacting protein"
/protein_id="AAH25311.1"
/db_xref="GeneID:64399"
/db_xref="HGNC:HGNC:14866"
/db_xref="MIM:606178"
/translation="MLKMLSFKLLLLAVALGFFEGDAKFGERNEGSGARRRRCLNGNP
PKRLKRRDRRMMSQLELLSGGEMLCGGFYPRLSCCLRSDSPGLGRLENKIFSVTNNTE
CGKLLEEIKCALCSPHSQSLFHSPEREVLERDLVLPLLCKDYCKEFFYTCRGHIPGFL
QTTADEFCFYYARKDGGLCFPDFPRKQVRGPASNYLDQMEEYDKVEEISRKHKHNCFC
IQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGI
KGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQV
DLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSV
LRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTI
LCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGS
YVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILS
SSKSMTQTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCC
CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNIRRVTRAGIL
DQIIDMTSYLLDLTSYIV"
BASE COUNT 771 a 662 c 651 g 651 t
ORIGIN
1 gagaagctgc agccgccggc agaggagacc tcagcatcat ctagagccca gcgctggccc
61 tgcctccgcc tgccccgccg ccgccgtcgc cgtttctgtt cctgctactg tcccacctaa
121 acaactcccg ttacacggac aagtgaacat ctgtggctgt cctctccttt tcttcctcct
181 cttccaactc cttctcctcc tcccacttcc cagccgcagc agaaagcccc caacccaact
241 gacactggca caactgcaaa cggtgtcatc cgcacaactt tatctcgctc ctcgggctcc
301 cctaaggcat tggacccatc gccgcgtctt ttattttttg caaagttgca tcgctgtaca
361 tatttttgtc cccgccacct ccctctgtct ctggagtgcc ctacagcccc gcaaactcct
421 cctggagctg cgccctagtg cccctgctgg gcagtggcgt tcccccccat cctcccgcgc
481 ccagcccctg ctgctctggg cagacgatgc tgaagatgct ctcctttaag ctgctgctgc
541 tggccgtggc tctgggcttc tttgaaggag atgctaagtt tggggaaaga aacgaaggga
601 gcggagcaag gaggagaagg tgcctgaatg ggaacccccc gaagcgcctg aaaaggagag
661 acaggaggat gatgtcccag ctggagctgc tgagtggggg agagatgctg tgcggtggct
721 tctaccctcg gctgtcctgc tgcctgcgga gtgacagccc ggggctaggg cgcctggaga
781 ataagatatt ttctgttacc aacaacacag aatgtgggaa gttactggag gaaatcaaat
841 gtgcactttg ctctccacat tctcaaagcc tgttccactc acctgagaga gaagtcttgg
901 aaagagacct agtacttcct ctgctctgca aagactattg caaagaattc ttttacactt
961 gccgaggcca tattccaggt ttccttcaaa caactgcgga tgagttttgc ttttactatg
1021 caagaaaaga tggtgggttg tgctttccag attttccaag aaaacaagtc agaggaccag
1081 catctaacta cttggaccag atggaagaat atgacaaagt ggaagagatc agcagaaagc
1141 acaaacacaa ctgcttctgt attcaggagg ttgtgagtgg gctgcggcag cccgttggtg
1201 ccctgcatag tggggatggc tcgcaacgtc tcttcattct ggaaaaagaa ggttatgtga
1261 agatacttac ccctgaagga gaaattttca aggagcctta tttggacatt cacaaacttg
1321 ttcaaagtgg aataaaggga ggagatgaaa gaggactgct aagcctcgca ttccatccca
1381 attacaagaa aaatggaaag ttgtatgtgt cctataccac caaccaagaa cggtgggcta
1441 tcgggcctca tgaccacatt cttagggttg tggaatacac agtatccaga aaaaatccac
1501 accaagttga tttgagaaca gccagagtct ttcttgaagt tgcagaactc cacagaaagc
1561 atctgggagg acaactgctc tttggccctg acggcttttt gtacatcatt cttggtgatg
1621 ggatgattac actggatgat atggaagaaa tggatgggtt aagtgatttc acaggctcag
1681 tgctacggct ggatgtggac acagacatgt gcaacgtgcc ttattccata ccaaggagca
1741 acccacactt caacagcacc aaccagcccc ccgaagtgtt tgctcatggg ctccacgatc
1801 caggcagatg tgctgtggat agacatccca ctgatataaa catcaattta acgatactgt
1861 gttcagactc caatggaaaa aacagatcat cagccagaat tctacagata ataaagggga
1921 aagattatga aagtgagcca tcacttttag aattcaagcc attcagtaat ggtcctttgg
1981 ttggtggatt tgtataccgg ggctgccagt cagaaagatt gtatggaagc tacgtgtttg
2041 gagatcgtaa tgggaatttc ctaactctcc agcaaagtcc tgtgacaaag cagtggcaag
2101 aaaaaccact ctgtctcggc actagtgggt cctgtagagg ctacttttcc ggtcacatct
2161 tgggatttgg agaagatgaa ctaggtgaag tttacatttt atcaagcagt aaaagtatga
2221 cccagactca caatggaaaa ctctacaaaa ttgtagatcc caaaagacct ttaatgcctg
2281 aggaatgcag agccacggta caacctgcac agacactgac ttcagagtgc tccaggctct
2341 gtcgaaacgg ctactgcacc cccacgggaa agtgctgctg cagtccaggc tgggaggggg
2401 acttctgcag aactgcaaaa tgtgagccag catgtcgtca tggaggtgtc tgtgttagac
2461 cgaacaagtg cctctgtaaa aaaggatatc ttggtcctca atgtgaacaa gtggacagaa
2521 acatccgcag agtgaccagg gcaggtattc ttgatcagat cattgacatg acatcttact
2581 tgctggatct aacaagttac attgtatagt ttctgggact gtttgaatat tctattccaa
2641 tgggcattta ttttttatcc tgtcattaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//