LOCUS BC025253 1976 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens oculocerebrorenal syndrome of Lowe, mRNA (cDNA clone
IMAGE:4864910), partial cds.
ACCESSION BC025253
VERSION BC025253.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1976)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1976)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC025253.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: h Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21396493.
FEATURES Location/Qualifiers
source 1..1976
/db_xref="H-InvDB:HIT000091007"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4864910"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1976
/gene="OCRL"
/gene_synonym="INPP5F"
/gene_synonym="LOCR"
/gene_synonym="OCRL1"
/db_xref="GeneID:4952"
/db_xref="MIM:309000"
CDS <1..370
/gene="OCRL"
/gene_synonym="INPP5F"
/gene_synonym="LOCR"
/gene_synonym="OCRL1"
/codon_start=2
/product="OCRL protein"
/protein_id="AAH25253.1"
/db_xref="GeneID:4952"
/db_xref="MIM:309000"
/translation="VGVGTREPVSSDRPAVRCPAEPGGRLDGAAAPGRSPAACLEGME
MKGPLREPCALTLAQRNGQYELIIQLHEKEQHVQDIIPINSHFRCVQEAEETLLIDIA
SNSGCKIQFLLGFLLGSEED"
BASE COUNT 562 a 424 c 411 g 579 t
ORIGIN
1 ggtgggtgtg gggacgcggg agccagtgtc gtcggatcgg cccgcagtcc gctgtcctgc
61 tgagcccgga ggccgcctgg atggagccgc cgctcccggt cggagcccag ccgcttgcct
121 cgagggtatg gagatgaagg gtcctctccg ggagccctgc gccctgaccc tagcccagag
181 gaacgggcaa tatgagttaa taatccagtt gcatgagaag gaacagcatg ttcaagatat
241 cattcctata aatagccact tcagatgtgt tcaagaagca gaagaaactc ttttgattga
301 catagcttct aacagtggct gcaaaattca gttccttctg ggctttctgc ttgggagcga
361 agaagactaa ggcttttact gttctctgat attctagaag cagacgatct cgggctccaa
421 gtatttcaga atgatttaaa aagtcatgcc acaggaaggg tctattgcag aatttcaagt
481 tctgtttata gtaaaaagga agagcgtttc ctaatccctc ctttaccata tcctacacag
541 aaaaatactt ttagacttat attgccaagc caaagttacc atattttggt gtttttgtgt
601 tttctcttta taaggcaaaa agatctgtat ttacactcct tcacctaggg atgtgtttgt
661 tgccctccta cccaattgtc atgattgtcc ttagtaccct aggcctagat tctgagatct
721 tcccattcta ggcctacaag cactacttgc tgtagctgag acttgtctag agtcctttgt
781 tttgcacttt tgacccaccc cttcctggat cactcctttg cactccactc ccctcgttct
841 gtcactttga acgaagtctg agtgaggcta gtgactcctt gggtgtcctc aacagtgaat
901 tcactgtctg cgtgcagtta ttacatgcat ttgtgcattt ctactacaat ggcatcttta
961 tgtctctgta acattggcct tttcatggct ccacactggg tggaaccata ttctcttaga
1021 tcacatttag tagcataact gtagggacta ttagagatgg catctcatcg atgagagaga
1081 atcacaatca gaatggaagc actttgagta tctgaagagt gagagcattc atgtttgaca
1141 ggtcctgctt cccactatcc ttttcctgtt attattcaaa ttttacacaa ggactaatcc
1201 tgggtgtctc tgagacccat ctcctgccta gacatccacc tccagaaagt gatcacaaaa
1261 agaggcagat gatagacact ggggtagggt cataccacag ggaaatacct ttcctgggct
1321 tgttttctag catatcactg acctgggatc tttgggtgat caagggtgtg gttagtggag
1381 gctctgtgct gcacgtatgc agtatcctat ctctttctac atcagatcaa aacactaagt
1441 tggtgtactg cctcgacctt ttttcagctc atcctggaac atatacagag ttgagagttt
1501 tagacaatct ctaggtagag gagacaagat gtagacccag acagaagaaa tctgcttccc
1561 taccatggct attccagcac cccaacctgt aattgccaag tcctctaagg tactaatttg
1621 tagctgctct gaagtaagga tttcggattc agctggtagg gaaagactct gcacctgctg
1681 tcttagggaa gaaatggttc aaatccatgt ggtgacattg cattagtctc cctttcactg
1741 ttttcttatt ctgtaattgt ttgttatatt tcccaaaaac gtcttgatca ctaagcaaag
1801 ctgctagtgg gattctatat ttcgtgtcat cttttttatt ataatttatt gcaaattttt
1861 ttctgaataa atatatgttg tgtgaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1921 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//