LOCUS BC025235 1340 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RD RNA binding protein, mRNA (cDNA clone MGC:39086
IMAGE:4876045), complete cds.
ACCESSION BC025235
VERSION BC025235.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1340)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1340)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: i Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 67906819.
FEATURES Location/Qualifiers
source 1..1340
/db_xref="H-InvDB:HIT000039852_09"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39086 IMAGE:4876045"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1340
/gene="RDBP"
/gene_synonym="D6S45"
/gene_synonym="NELF-E"
/gene_synonym="RD"
/gene_synonym="RDP"
/db_xref="GeneID:7936"
/db_xref="HGNC:HGNC:13974"
/db_xref="MIM:154040"
CDS 56..1198
/gene="RDBP"
/gene_synonym="D6S45"
/gene_synonym="NELF-E"
/gene_synonym="RD"
/gene_synonym="RDP"
/codon_start=1
/product="RD RNA binding protein"
/protein_id="AAH25235.1"
/db_xref="GeneID:7936"
/db_xref="HGNC:HGNC:13974"
/db_xref="MIM:154040"
/translation="MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQG
GVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKG
PVPTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGD
GPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDR
DRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLL
RGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP
MLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKENLVDGF"
BASE COUNT 401 a 343 c 379 g 217 t
ORIGIN
1 gcgggcgcgg ccggagaccg tggggccccc ggttgccgcc ccctcgggag ccaccatgtt
61 ggtgataccc cccggactga gcgaggaaga ggaggctctg cagaagaaat tcaacaagct
121 caagaaaaag aaaaaggcat tgctggctct gaagaagcaa agtagcagca gcacaaccag
181 ccaaggtggt gtcaaacgct cactatcaga gcagcctgtc atggacacag ccacagcaac
241 agagcaggca aagcagctgg tgaagtcagg agccatcagt gccatcaagg ctgagaccaa
301 gaactcaggc ttcaagcgtt ctcgaaccct tgaggggaag ttaaaggacc ccgagaaggg
361 accagtcccc actttccagc cgttccagag gagcatatct gctgatgatg acctgcaaga
421 gtcatccaga cgtccccaga ggaaatctct gtatgagagc tttgtgtctt ctagtgatcg
481 acttcgagaa ctaggaccag atggagaaga ggcagagggc ccaggggctg gtgatggtcc
541 ccctcgaagc tttgactggg gctatgaaga acgcagtggt gcccactcct cagcctcccc
601 tccccgaagc cgcagccggg accgcagcca tgagaggaac cgggacagag accgagatcg
661 ggagcgggat cgagaccggg atcgagacag agacagagag cgggacaggg atcgggatcg
721 ggatcgagat cgagaccggg aacgggacag ggatcgggag cgggatcgag accgagaccg
781 agagggtcct ttccgcaggt cggattcatt ccctgaacgg cgagccccta ggaaagggaa
841 tactctctat gtatatggag aagacatgac acccaccctt ctccgtgggg ccttctctcc
901 ttttggaaac atcattgacc tctccatgga cccacccaga aactgtgcct tcgtcaccta
961 tgaaaagatg gagtcagcag atcaggccgt tgctgagctc aacgggaccc aggtggagtc
1021 tgtacagctc aaagtcaaca tagcccgaaa acagcccatg ctggatgccg ctactggcaa
1081 gtctgtctgg ggctccctcg ctgtccagaa cagccctaag ggttgccacc gggacaagag
1141 gacccagatt gtctacagtg atgacgtcta caaggaaaac cttgtggatg gcttctaggg
1201 aacagagctg gattccttgt gcctcatatg ccccaatgct ggtctcagta aaacactgag
1261 gtggaagctt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1321 aaaaaaaaaa aaaaaaaaaa
//