LOCUS BC025178 1300 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens small nuclear ribonucleoprotein polypeptide N, mRNA
(cDNA clone MGC:34180 IMAGE:4158469), complete cds.
ACCESSION BC025178
VERSION BC025178.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1300)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1300)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: a Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29540556.
FEATURES Location/Qualifiers
source 1..1300
/db_xref="H-InvDB:HIT000039848"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34180 IMAGE:4158469"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1300
/gene="SNRPN"
/gene_synonym="HCERN3"
/gene_synonym="RT-LI"
/gene_synonym="SM-D"
/gene_synonym="SMN"
/gene_synonym="SNRNP-N"
/gene_synonym="SNURF-SNRPN"
/db_xref="GeneID:6638"
/db_xref="HGNC:HGNC:11164"
/db_xref="MIM:182279"
CDS 433..1155
/gene="SNRPN"
/gene_synonym="HCERN3"
/gene_synonym="RT-LI"
/gene_synonym="SM-D"
/gene_synonym="SMN"
/gene_synonym="SNRNP-N"
/gene_synonym="SNURF-SNRPN"
/codon_start=1
/product="small nuclear ribonucleoprotein polypeptide N"
/protein_id="AAH25178.1"
/db_xref="GeneID:6638"
/db_xref="HGNC:HGNC:11164"
/db_xref="MIM:182279"
/translation="MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCD
CDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG
GPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATAS
IAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPP
GMRPPPPGIRGPPPPGMRPPRP"
BASE COUNT 331 a 330 c 345 g 294 t
ORIGIN
1 atctgtctga ggagcggtca gtgacgcgat ggagcgggca agggatcgct tacacctgag
61 acgaactaca gaacagcacg taccagaggt ggaagtccaa gtcaaacgca gaaggactgc
121 ctcactgagc aaccaagagt gtcagttgta cccgaggcgt tctcagcagc agcaagtacc
181 tgtggtggat ttccaggctg aactgaggca ggcattctta gctgagacac caagaggtgg
241 ttaaagccat attggagtag cgaggaatct gattccaagc aaaaaccagg ctccatctac
301 tctttgaagc ttctgcccag cttgcattgt ttctaggaga acctgcgtca tacctttatc
361 tatagccttc ccctaggtct tcagaagcat caagttttaa ctgtggacat tggatttggt
421 ggaacagcaa tcatgactgt tggcaagagt agcaagatgc tgcagcacat tgactataga
481 atgagatgta tcctgcaaga tggccgaatc ttcattggca cctttaaggc ttttgacaag
541 catatgaatt tgatcctctg tgattgtgat gagttcagaa agatcaagcc aaagaatgcg
601 aagcaaccag agcgtgaaga aaagcgggtt ttgggtctgg tgttgctgcg tggggagaac
661 ttggtatcca tgactgtgga ggggccaccc cccaaagata ctggcattgc tcgggtacca
721 cttgctggag ctgctggagg ccctggggtt ggtagggcag ctggtagagg agtaccagct
781 ggtgtgccaa ttccccaggc ccctgctgga ttggcaggcc ctgtccgagg agttggggga
841 ccatcccagc aggtaatgac tccacaggga agaggcactg tagcagctgc tgctgttgct
901 gcgactgcca gtattgctgg agccccaaca cagtacccac caggacgggg cactccgccc
961 ccacccgtcg gcagagcaac cccacctcca ggcattatgg ctcctccacc tggtatgaga
1021 ccacccatgg gcccaccaat tgggcttccc cctgctcgag ggacgccaat aggcatgccg
1081 cctccgggaa tgagaccccc tccaccaggc attagaggtc cacctccccc aggaatgcgt
1141 ccaccaagac cttagcatac tgttgatcca tctcagtcac tttttcccct gcaatgcgtc
1201 ttgtgaaatt gtgtagagtg tttgtgagct ttttgttccc tcattctgca ttaataatag
1261 ctaataataa atgcatagag caattaaaaa aaaaaaaaaa
//