LOCUS BC025026 1196 bp mRNA linear HUM 20-DEC-2004
DEFINITION Homo sapiens SIN3 homolog B, transcription regulator (yeast), mRNA
(cDNA clone IMAGE:3923074), partial cds.
ACCESSION BC025026
VERSION BC025026.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1196)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1196)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (05-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: d Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1196
/db_xref="H-InvDB:HIT000090996"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3923074"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1196
/gene="SIN3B"
/gene_synonym="KIAA0700"
/db_xref="GeneID:23309"
/db_xref="MIM:607777"
CDS <1..1060
/gene="SIN3B"
/gene_synonym="KIAA0700"
/codon_start=2
/product="SIN3B protein"
/protein_id="AAH25026.1"
/db_xref="GeneID:23309"
/db_xref="MIM:607777"
/translation="AHAGGGSGGSGAGGPAGRGLSGARWGRSGSAGHEKLPVHVEDAL
TYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAF
LPLGYRIDIPKNGKLNIQSPLTSQENSHNHGDGAEDFKQQVPYKEDKPQVPLESDSVE
FNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLNTRGRPFRGMSEEEVFTEVAN
LFRGQEDLLSEFGQFLPEAKRSLFTGNGPCEMHSVQKNEHDKTPEHSRKRSRPSLLRP
VSAPAKKKMKLRGTKDLSIAAVGKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFN
QELVSGSELLQLVSPFLG"
BASE COUNT 285 a 340 c 330 g 241 t
ORIGIN
1 ggcgcacgct ggcggtggca gcggtggcag cggtgccggc ggccccgcgg gccgggggct
61 gagcggcgcc cgctggggtc gctcgggctc cgcaggccac gagaagctgc cggtgcacgt
121 agaagacgcc ctcacctatc tggaccaggt gaagatccgc tttggcagcg accctgccac
181 ctacaacggc ttcctggaga tcatgaagga gttcaaaagc cagagcatcg atactcctgg
241 agtcatcaga cgtgtctcgc agctcttcca cgagcaccct gacctcattg ttggattcaa
301 cgcttttctt cccctcggat atagaataga cattcccaag aatggcaagt taaacataca
361 gtcgcctctg acaagccagg agaattcgca caaccacggg gacggtgcag aggacttcaa
421 gcagcaggtg ccgtataaag aggacaaacc ccaggtgccc ctggagtccg attccgtgga
481 attcaacaac gccatcagct atgtgaataa gattaaaacc cgcttcctag accacccaga
541 aatctacagg tcattcctgg agatcctgca cacgtaccag aaggagcagc tgaacacgag
601 gggccggcca ttccgaggca tgtctgaaga ggaggtgttc accgaggtgg ccaacctctt
661 ccggggccag gaggacctgc tctcagagtt tggacagttc ctgcccgaag ccaagcggtc
721 tctgttcaca ggaaacgggc cgtgcgagat gcacagcgtg cagaagaacg agcacgacaa
781 gaccccggag cacagcagga agcgctcccg gccctcgctc ctccgccccg tgtctgcacc
841 cgccaagaaa aaaatgaaac ttcgtggtac caaagacctg tccatcgctg cagtggggaa
901 gtacgggact ctgcaggaat tttctttctt tgacaaggtc cgccgggtgc tgaagagcca
961 ggaggtgtat gaaaacttcc tccgctgcat cgcactcttc aaccaggagc tggtgtctgg
1021 ctctgagctc ctgcagctcg tcagcccatt tctggggtga gcagctgact tcccagggct
1081 ccctaggggg gttctgttcc tgtcaactcc atctacttgg tttttagtta ctgtttttga
1141 gcaatgattg tgcttttcta aaatcctgtt tattaattga aaaaaaaaaa aaaaaa
//