LOCUS BC024746 2169 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEP domain containing 6, mRNA (cDNA clone MGC:29908
IMAGE:5112749), complete cds.
ACCESSION BC024746
VERSION BC024746.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2169)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2169)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: m Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12232472.
FEATURES Location/Qualifiers
source 1..2169
/db_xref="H-InvDB:HIT000039834"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29908 IMAGE:5112749"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2169
/gene="DEPDC6"
/gene_synonym="DEP.6"
/gene_synonym="DKFZp564B1778"
/gene_synonym="FLJ12428"
/gene_synonym="FLJ13854"
/db_xref="GeneID:64798"
/db_xref="HGNC:HGNC:22953"
CDS 93..1322
/gene="DEPDC6"
/gene_synonym="DEP.6"
/gene_synonym="DKFZp564B1778"
/gene_synonym="FLJ12428"
/gene_synonym="FLJ13854"
/codon_start=1
/product="DEP domain containing 6"
/protein_id="AAH24746.1"
/db_xref="GeneID:64798"
/db_xref="HGNC:HGNC:22953"
/translation="MEEGGSTGSAGSDSSTSGSGGAQQRELERMAEVLVTGEQLRLRL
HEEKVIKDRRHHLKTYPNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVC
DEHKEFKDVKLFYRFRKDDGTFPLDNEVKAFMRGQRLYEKLMSPENTLLQPREEEGVK
YERTFMASEFLDWLVQEGEATTRKEAEQLCHRLMEHGIIQHVSSKHPFVDSNLLYQFR
MNFRRRRRLMELLNEKSPSSQETHDSPFCLRKQSHDNRKSTSFMSVSPSKEIKIVSAV
RRSSMSSCGSSGYFSSSPTLSSSPPVLCNPKSVLKRPVTSEELLTPGAPYARKTFTIV
GDAVGWGFVVRGSKPCHIQAVDPSGPAAAAGMKVCQFVVSVNGLNVLHVDYRTVSNLI
LTGPRTIVMEVMEELEC"
BASE COUNT 635 a 476 c 543 g 515 t
ORIGIN
1 ggcgcgggaa gcgtctgtga gggcagactg atccgagcac ccaaaccctc ggcggacagc
61 ggagccagtg gtagccgcac ggccctaaaa ccatggagga gggcggcagc actggcagtg
121 ctggcagtga cagcagcacc agcgggagtg gcggggcgca gcaaagggag ctggagcgca
181 tggctgaggt cttggtcacc ggggaacagc tacggctcag gctgcatgaa gaaaaggtta
241 ttaaagatag acgtcatcat ctcaagacct acccaaactg ttttgtcgca aaagaactga
301 ttgactggct gattgaacac aaagaggctt ctgacagaga gacggcaatt aaactcatgc
361 agaaattagc agaccggggc attattcacc atgtgtgtga tgagcataag gaattcaagg
421 atgtcaaact cttctaccgc tttagaaagg atgacggcac cttcccattg gataatgaag
481 tgaaggcctt tatgagagga cagaggctat atgaaaagct gatgagccct gaaaacacac
541 tcctgcagcc cagggaggag gaaggggtca agtatgagcg caccttcatg gcatctgaat
601 tcctggactg gctggttcag gaaggtgagg ccaccacgag gaaagaggca gagcagcttt
661 gccaccggct tatggagcat ggcatcatcc agcatgtgtc cagcaagcac ccatttgtgg
721 acagcaatct tctctaccag ttcagaatga acttccggcg gaggcgaaga ctgatggagc
781 tgctcaatga aaagtccccc tcctcccagg aaactcatga cagtcccttc tgcctgagga
841 agcagagcca tgacaatcgg aaatctacca gctttatgtc agtgagcccc agcaaggaga
901 tcaagatcgt gtctgcagtg aggagaagca gcatgagcag ctgtggcagc agcggctact
961 tcagcagcag ccccaccctc agcagcagcc cccctgtgct ctgcaacccc aagtccgtgc
1021 tgaagagacc tgtcacctct gaggaactcc ttactcccgg ggctccgtat gcaaggaaga
1081 cattcacgat tgttggtgac gcggttggct ggggttttgt ggtgcgagga agtaagccat
1141 gccacatcca ggctgtagac cccagtggcc ctgcagccgc agcaggaatg aaggtctgtc
1201 agtttgtcgt ctctgtcaac gggctcaatg tcctgcatgt agactaccgg accgtgagca
1261 atctgattct gacgggccca cggacgattg tcatggaagt catggaggag ttagagtgct
1321 gagctcctgg gcctcccagc cctccagtgg cctgtgggtg agggaagcca gaatgacaca
1381 aagcaatgca aagacaagat tgccatgcaa atggatggtt ttggacatac gagtcttctc
1441 cgcacataca tgtctaaagt tgagttttat acactgaatg tggaagaacc gggtatcata
1501 tcttttttaa aaaatgtcag tgtagaaaac atttgggaaa ccattttcct acatgataga
1561 actgccttac tagatttcta tttgtagctc tcattcattg ttttttatct tagtttgcag
1621 aaaggtgttg aaatgcttct ctagcccaaa cagcgacatg ctaaagtccc cttcttcaga
1681 gtcaatagag tagttgttaa aggttttaaa ttgtactttc tccaaaatta gcatgcagct
1741 atttaatagg gaatctagat ttcaccaaga ttcaaatcag caacatttaa aggaataaga
1801 cctgtcacta gcattttcaa gggggttcta aagcattcaa gtgcttaaaa gccataaaaa
1861 atgacttctt aattcctgcc tttagtgtca acttttaagt taatacaggt ttcaattgtg
1921 gcattaggaa aaaaaaaaaa ccttgtgatg ctatggttgg gggtagttag ggagagacta
1981 catgaaattg tgtgccccta ttttctttct gatcctaaat cattttgttt tataaatcag
2041 ctatagcatc tttctagaat taatcctgaa tatgttgaat gttaaaatag agaagtttgt
2101 atatacacat aattaaaaat caacccttct ggcaagaaaa aaaaaaaaaa aaaaaaaaaa
2161 aaaaaaaaa
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