LOCUS BC024592 3737 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens neurochondrin, mRNA (cDNA clone MGC:9465
IMAGE:3914058), complete cds.
ACCESSION BC024592
VERSION BC024592.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3737)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3737)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 22 Row: m Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62526027.
FEATURES Location/Qualifiers
source 1..3737
/db_xref="H-InvDB:HIT000039825"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9465 IMAGE:3914058"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3737
/gene="NCDN"
/gene_synonym="KIAA0607"
/db_xref="GeneID:23154"
/db_xref="HGNC:HGNC:17597"
/db_xref="MIM:608458"
CDS 374..2563
/gene="NCDN"
/gene_synonym="KIAA0607"
/codon_start=1
/product="neurochondrin"
/protein_id="AAH24592.1"
/db_xref="GeneID:23154"
/db_xref="HGNC:HGNC:17597"
/db_xref="MIM:608458"
/translation="MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALR
EAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHV
LRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLT
AVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDL
LAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSW
QRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVV
TACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFV
FASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPT
TPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTS
VLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALVQQQGRLLLA
ANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSP
EYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPE
MVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP"
BASE COUNT 704 a 1205 c 1088 g 740 t
ORIGIN
1 agcagcggcc cgaggctccc ggagcatcgc gctgggagaa gacttcgccg ctcggggccg
61 cagcctggtg agctcagccc ccttcgggcc ctcccctgca tcccagccgg ggcctctccg
121 agccggcgct gatcgatgcc gacacacccc ggggacccta tcgcgactcc atcgcgccat
181 atcgcgacac catcgtgccc tgtcgagact ccattttgtc acagcccttt tcaatatata
241 tctttttttt tttaatttgc cctgtcatct ttgggggctg tctcccatgt cgtgattttg
301 acgtgatctc tccgtgacat caccgcgcca tcgtgaagtg tgatctcatc gccgccctgt
361 cgtgacttca tcaatgtcgt gttgtgacct ggctgcggcg ggacagttgg gcaaggcgag
421 catcatggcc tcggattgcg agccagctct gaaccaggca gagggccgaa accccaccct
481 ggagcgctac ctgggagccc tccgtgaggc caagaatgac agcgagcagt ttgcagccct
541 gctgctagtg accaaggcag tcaaagcagg tgacatagat gccaaaactc ggcggcggat
601 cttcgatgct gtcggcttca ccttccccaa tcgtctcctg accaccaagg aggcgccgga
661 tggctgccct gaccatgttc tgcgggcttt gggtgtggcc ctgctggcct gcttctgcag
721 tgaccctgaa ctggccgccc atccccaagt cctgaacaag attcccattc ttagcacctt
781 cctcacagcc cggggggacc cggacgatgc tgcccgccgc tccatgattg atgacaccta
841 ccagtgcctg acggctgtag caggcacacc cagagggcct cggcacctca ttgctggtgg
901 caccgtgtct gccctatgcc aggcatacct ggggcacggc tatggctttg accaggccct
961 ggcactcctg gtggggctgc tggctgctgc cgagacacag tgctggaagg aggcggagcc
1021 cgacctgctg gccgtgttgc ggggcctcag tgaggatttc cagaaagctg aggatgccag
1081 caagtttgag ctctgccagc tgctgcccct ctttttgccc ccgacaaccg tgccccctga
1141 atgctaccgg gatctgcagg ccgggctggc acgcatcctg ggaagcaagc tgagctcctg
1201 gcagcgcaac cctgcactga agctggcagc ccgcctggca cacgcctgcg gctccgactg
1261 gatcccggcg ggcagctccg ggagcaagtt cctggccctg ctggtgaatc tggcgtgcgt
1321 ggaagtgcgg ctggcactgg aggagacggg cacggaggtg aaagaggatg tggtgaccgc
1381 ctgctatgcc ctcatggagt tggggatcca ggaatgcact cgctgtgagc agtcactgct
1441 taaggagcca cagaaggtgc agctcgtgag cgtcatgaag gaggccatag gggctgttat
1501 ccactacctg ctgcaggtgg ggtcagagaa gcagaaggag ccctttgtgt ttgcctcggt
1561 gcggatcctg ggtgcctggc tggccgagga gacctcatcc ttgcgtaagg aggtgtgcca
1621 gctgctgccc ttcctcgtcc gctatgccaa gaccctctac gaggaggccg aggaggccaa
1681 tgacctttcc cagcaggtgg ccaacctggc catctccccc accaccccag ggcccacctg
1741 gccaggagac gctctccggc tcctcctgcc tggctggtgc cacctgaccg ttgaagatgg
1801 gccccgggag atcctgatca aggaaggggc cccctcgctt ctgtgcaagt atttcctgca
1861 gcagtgggaa ctcacatccc ctggccacga cacctcggtg ctgcctgaca gcgtggagat
1921 tggcctgcag acctgctgcc acatcttcct caacctcgtg gtcaccgcac cggggctgat
1981 caagcgtgac gcctgcttca catctctaat gaacaccctc atgacgtcgc taccagcact
2041 agtgcagcaa cagggaaggc tgcttctggc tgctaatgtg gccaccctgg ggctcctcat
2101 ggcccggctc cttagcacct ctccagctct tcagggaaca ccagcatccc gagggttctt
2161 cgcagctgcc atcctcttcc tatcacagtc ccacgtggcg cgggccaccc cgggctcaga
2221 ccaggcagtg ctagccctgt cccctgagta tgagggcatc tgggccgacc tgcaggagct
2281 ctggttcctg ggcatgcagg ccttcaccgg ctgtgtgcct ctgctgccct ggctggcccc
2341 cgctgccctg cgctcccgct ggccgcagga gctgctccag ctgctaggca gtgtcagccc
2401 caactctgtc aagcccgaga tggtggccgc ctatcagggt gtcctggtgg agctggcgcg
2461 ggccaaccgg ctgtgccggg aggccatgag gctgcaggcg ggcgaggaga cggccagcca
2521 ctaccgcatg gctgccttgg agcagtgcct gtcagagccc tgaggggtgt ccaccgggga
2581 cagacccagg ggcgggcaga gagggaagga gggaggaggc atcttccctg aagcccccaa
2641 tctggccccc ccctccccag acttcctccc caaaacaccc cagctttctg gcttttctga
2701 gggcaagggc atggtgccca cccctcaagt gtaaggaact gcgttccgcc cctcaggccc
2761 ccatgggggc agggatcggc ttggaaatca acgtggttgt ccccgccagg ccggggaagg
2821 ttggagcagc ccccagggag gggggcacta ggtgtcattg tgcccgatgt ctggctcccc
2881 tgcaggaggg aggctccagg gtaagacagg gctggcagga gcagactgcc tcagcccatg
2941 tgccctgccg gccagggcgt gggctcccct cggctgtggt gcctcctctg gccccccagg
3001 tccacgtcct ttaaattggc cctttggctc ttgcccttgg ctcccttggg cagacagcag
3061 gcttaggcca ttgatatcgc agttcttcct atcagcttca gtgacccagg gtctgaactg
3121 cctccatcct agggcaacct ggggcagaca ggcctggtgg ggggtgggga aacctccttc
3181 cacctgagct tgcttgaagg gacccagagt ctttgggccc agatctttaa acctttgtgt
3241 cgtgttgcag cagagtgacg atgggggttg gggggttatt tattttgcct gtccttatcc
3301 ctgcttggac acctgagcat ctgattcctg tccccctggt gccatctggc ctggctggag
3361 ccaggaacag gagggacact tccccagaat ccgcatgttt ccccagtgat tacactccac
3421 tgccaccgtg gtgcctggct ttaactccca cccctgctat gactcctctc tgcagagacg
3481 cgactggcgg ctccagcagg gactaccttt cttataaacc cagggggacc acacacacac
3541 acacacacac acacacacac acacacacac acacacacac acacacacac tcttgatccc
3601 ttgcttccct cccccagtgc gttctgtgat cgccaagttc aaagctgtgc acatgtggac
3661 actcaataaa tgttcattgg tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3721 aaaaaaaaaa aaaaaaa
//