LOCUS BC024292 2247 bp mRNA linear HUM 07-AUG-2008
DEFINITION Homo sapiens keratin 5, mRNA (cDNA clone MGC:39301 IMAGE:5428482),
complete cds.
ACCESSION BC024292
VERSION BC024292.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2247)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2247)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: o Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..2247
/db_xref="H-InvDB:HIT000039811"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39301 IMAGE:5428482"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..2247
/gene="KRT5"
/gene_synonym="CK5"
/gene_synonym="DDD"
/gene_synonym="K5"
/gene_synonym="KRT5A"
/db_xref="GeneID:3852"
/db_xref="HGNC:HGNC:6442"
/db_xref="MIM:148040"
CDS 88..1860
/gene="KRT5"
/gene_synonym="CK5"
/gene_synonym="DDD"
/gene_synonym="K5"
/gene_synonym="KRT5A"
/codon_start=1
/product="keratin 5"
/protein_id="AAH24292.1"
/db_xref="GeneID:3852"
/db_xref="HGNC:HGNC:6442"
/db_xref="MIM:148040"
/translation="MSRQSSVSFRSGGSRSFSTASAITPSVSRTSFTSVSRSGGGGGG
GFGRVSLAGACGVGGYGSRSLYNLGGSKRISISTSGGSFRNRFGAGAGGGYGFGGGAG
SGFGFGGGAGGGFGLGGGAGFGGGFGGPGFPVCPPGGIQEVTVNQSLLTPLNLQIDPS
IQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWTLLQEQGTKTVRQNLEPL
FEQYINNLRRQLDSIVGERGRLDSELRNMQDLVEDFKNKYEDEINKRTTAENEFVMLK
KDVDAAYMNKVELEAKVDALMDEINFMKMFFDAELSQMQTHVSDTSVVLSMDNNRNLD
LDSIIAEVKAQYEEIANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRM
IQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLL
REYQELMNTKLALDVEIATYRKLLEGEECRLSGEGVGPVNISVVTSSVSSGYGSGSGY
GGGLGGGLGGGLGGGLAGGGSGSYYSSSSGGVGLSGGLSVGGSGFSASSGRGLGVGFG
SGGGSSSSVKFVSTTSSSRKSFKS"
BASE COUNT 510 a 594 c 672 g 471 t
ORIGIN
1 cttctgcgtc ctgctgagct ctgttctctc cagcacctcc caacccacta gtgcctggtt
61 ctcttgctcc accaggaaca agccaccatg tctcgccagt caagtgtgtc cttccggagc
121 gggggcagtc gtagcttcag caccgcctct gccatcaccc cgtctgtctc ccgcaccagc
181 ttcacctccg tgtcccggtc cgggggtggc ggtggtggtg gcttcggcag ggtcagcctt
241 gcgggtgctt gtggagtggg tggctatggc agccggagcc tctacaacct ggggggctcc
301 aagaggatat ccatcagcac tagtggtggc agcttcagga accggtttgg tgctggtgct
361 ggaggcggct atggctttgg aggtggtgcc ggtagtggat ttggtttcgg cggtggagct
421 ggtggtggct ttgggcttgg tggcggagct ggctttggag gtggcttcgg tggccctggc
481 tttcctgtct gccctcctgg aggtatccaa gaggtcactg tcaaccagag tctcctgact
541 cccctcaacc tgcaaatcga ccccagcatc cagagggtga ggaccgagga gcgcgagcag
601 atcaagaccc tcaacaataa gtttgcctcc ttcatcgaca aggtgcggtt cctggagcag
661 cagaacaagg ttctggacac caagtggacc ctgctgcagg agcagggcac caagaccgtg
721 aggcagaacc tggagccgtt gttcgagcag tacatcaaca acctcaggag gcagctggac
781 agcatcgtgg gggaacgggg ccgcctggac tcagagctaa gaaacatgca ggacctggtg
841 gaagacttca agaacaagta tgaggatgaa atcaacaagc gtaccactgc tgagaatgag
901 tttgtgatgc tgaagaagga tgtagatgct gcctacatga acaaggtgga gctggaggcc
961 aaggttgatg cactgatgga tgagattaac ttcatgaaga tgttctttga tgcggagctg
1021 tcccagatgc agacgcatgt ctctgacacc tcagtggtcc tctccatgga caacaaccgc
1081 aacctggacc tggatagcat catcgctgag gtcaaggccc agtatgagga gattgccaac
1141 cgcagccgga ccgaagccga gtcctggtat cagaccaagt atgaggagct gcagcagaca
1201 gctggccggc atggcgatga cctccgcaac accaagcatg agatctctga gatgaaccgg
1261 atgatccaga ggctgagagc cgagattgac aatgtcaaga aacagtgcgc caatctgcag
1321 aacgccattg cggatgccga gcagcgtggg gagctggccc tcaaggatgc caggaacaag
1381 ctggccgagc tggaggaggc cctgcagaag gccaagcagg acatggcccg gctgctgcgt
1441 gagtaccagg agctcatgaa caccaagctg gccctggacg tggagatcgc cacttaccgc
1501 aagctgctgg agggcgagga atgcagactc agtggagaag gagttggacc agtcaacatc
1561 tctgttgtca caagcagtgt ttcctctgga tatggcagtg gcagtggcta tggcggtggc
1621 ctcggtggag gtcttggcgg cggcctcggt ggaggtcttg ccggaggtgg cagtggaagc
1681 tactactcca gcagcagtgg gggtgtcggc ctaagtggtg ggctcagtgt ggggggctct
1741 ggcttcagtg caagcagtgg ccgagggctg ggggtgggct ttggcagtgg cgggggtagc
1801 agctccagcg tcaaatttgt ctccaccacc tcctcctccc ggaagagctt caagagctaa
1861 gaacctgctg caagtcactg ccttccaagt gcagcaaccc agcccatgga gattgcctct
1921 tctaggcagt tgctcaagcc atgttttatc cttttctgga gagtagtcta gaccaagcca
1981 attgcagaac cacattcttt ggttcccagg agagccccat tcccagcccc tggtctcccg
2041 tgccgcagtt ctatattctg cttcaaatca gccttcaggt ttcccacagc atggcccctg
2101 ctgacacgag aatccaaagt tttcccaaat ctaaatcatc aaaacagaat ccccacccca
2161 atcccaaatt ttgttttggt tctaactacc tccagaatgt gttcaataaa atgcttttat
2221 aatataaaaa aaaaaaaaaa aaaaaaa
//