LOCUS BC024278 4095 bp mRNA linear HTC 18-MAR-2009
DEFINITION Homo sapiens BMS1 pseudogene 5, mRNA (cDNA clone IMAGE:3614253),
with apparent retained intron.
ACCESSION BC024278
VERSION BC024278.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4095)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4095)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: a Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281482
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..4095
/db_xref="H-InvDB:HIT000090921_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3614253"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
BASE COUNT 1201 a 828 c 864 g 1202 t
ORIGIN
1 gttgtgaaca ggttagagtt acttgttatt ggtaaatagc cactatggag actaaggacc
61 agaagaaaca cagaaagaaa aacagtggac ccaaagctgc aaagaaaaag aagtggcatc
121 tgcaggatct ccagctagga gacgaagaaa atgcccagaa gagaaatgcc aatgcttttg
181 cagttcagtc tgctgtgtgg atgtctcgat cctttcacag gactctggat ttgaagacac
241 aaaagcatca tattccagtg gttgatggaa ctccactaga gccgccacca atagcggtag
301 tggtgacggg gcctccaaag ttggaaagag cactttgata taatgcctca ttcggaactt
361 cacctggcag aagttcaccg agatcagagg ccctgtgacg atcgtgtcag gtaaaaagcg
421 cagactcacc attattgaat gtgggtgtga cattaacatg atgattgatc tggctaaagt
481 agcagatctg gtactgatgc ttatagatgc cagctttggg tttgaaatgg aaatgtttga
541 gtttctaaac atctgtcaag cacatggctt tcctaaaatt ctgggagttc tcacccacct
601 cgactccttc aagcataaca agcaactgaa gaagacaaag aagtgattaa aacacaggtt
661 ctggacagaa gtttaccagg ttgccaaact gttctacctt tctggaatgg tgcatggaga
721 atatcaaaac caagaaatcc acaatctggg ccattttatt acagttatga agtttaggcc
781 tctcatggca aacttttcac ccttatatcc tggcagacag ttaaaaggat ggaagatttg
841 acaaacccgg aggatatcca aacaaacatc aaatgtgacc tgcaggtgtc actttatggt
901 tatttaagag gagcacactt gaaaaataaa agccaaattc acatgccagg acaaggtggg
961 gctcacccat gagctggtcc agagtctcat ctccacctac tccaccattg atgccaagat
1021 ggcttcaagt cgagtgatgc tgctttccaa ttccaaacca cttgggtcag aggctataga
1081 taatcaaggg tgagtggtgt cattgagcaa acacaaagtc gggctcatcc aaggatgaga
1141 ttttgccaga gaaaggacga gcagcaagtc agggagctta aggtaattat gagaaagtga
1201 ctatctaaaa ttgcttaggt agaaggagac agattggatt tttgtgtgtt tggtatttgg
1261 gataagaggg atgtgggtgt gtacttgaca tgggttgttt attctcgctc tctctctttt
1321 tttttttttt gagagggagt ctcactctgt cacccaggct ggagtgctgt ggcacggtct
1381 tggctcactg caacctctgc ctcccgagtt caggggattc tcctgcctca gcctcccgag
1441 tagctgggat tgcgggtgcc tgccaccatg cccggctaat ttttgtgatt atttttttta
1501 gtggagacga ggtttcacta tgtaagtgaa gctggtctcg aactcctgac ctcagatgat
1561 ccacccgcct cggcctccca aagtgctggg attacaggtg tgagccaccg cgcctggcct
1621 gtttattctc ttaagagaga aaatgagggg attaatggac tgtagttctg gacaaggtgg
1681 aaaactctta aagtggaagt attggggcga atgctctgac aggctaggat ggtgcagtca
1741 gtcccttcac ccagaaatca gtagaatgtt agcagttcag actcaaacct tgtgaaaaac
1801 aggtggtgga aaggaaatcc ctcacagcaa ctggcaccat aatcaagaca atgtttgcag
1861 aataaatgga gttacctgct ttcagcccca ggtcatagct attgtctgcc ctgctgatat
1921 gtgataataa tttgtgatca tgttgtctta aaatggggtc actcatctcc agtagaatta
1981 agtccacagt gaagttgtcc ccccatcccc aaagagataa acatatatga atgaactcac
2041 gtgataacaa ctactgctgc ctgggatcat gagagacctg aactgaactg ataggaagtg
2101 aaaggtggct gagataatga gaatagaccc atctgcagag gatcataaaa ccagcaaaga
2161 caagatcttg tctaagatgc cttcacaaac tttgtccatg agaactctta aggatttcac
2221 cagacctgtt ggctgctgct gtgatctctg cccaagagga gcctctgacc aacatccaaa
2281 gggcttctgg acccactgga ctcctctgga ggtaccttag tctcccgatc catggctgtg
2341 tttttttact ccctttatcg ctgcctgtgt gtagaatgat aattgcacaa ttgatagtgt
2401 gaagacctct tgataaatgg taaatctgag catatgtatt tggctgacat gtcattgtga
2461 aacctcacag cttcagtcag tgtcaacgca gctagggagc atgtacctaa tgcacatatc
2521 actgggcata gtctacaggc acctaataac tcaggtacct taacagtcac taatgagtgt
2581 ctctccaagg actaaacaat ggaagactgt agaagatgct attcattaaa atatctcaag
2641 aatatggaag actattattc gcttctcatg ggacaggact ttatagggca cctgaaaaaa
2701 ctcccatgaa aaatcacttt tacaaaatgt caagttatga tatccaagat gaaaccaatg
2761 agtcacaaca ttcacataat acactgtaca accctgatct cttgactgtc atcaaatgtt
2821 tcttacctct aaaccaaagt ttcattttat aatttaattt ttctcatttt ttccattctc
2881 ttagcttaag aaaagatcat tacaaacttt ttgtaagttt ttcatatatg cttgcaaagg
2941 gttgtaaaac tttattgtga ttattcttgc tttaagctga aacttcccta atctttcttt
3001 agagattgtg gcatagcatg ttagtttctt ttccatatcc aattgttttc tgttatgaat
3061 acagaaatac aggcactgtc ttgtaacttt aaatagacat catctcaagt ctacaagaat
3121 tatccaaaat ggtatttaat gacatttcta ggtcttcaga cactattaat gcagattgta
3181 gcctctaggt cctgaagatt ttactagata ctggttactg aaactgagct ttcttgaatt
3241 ctttttcctt ccactgtggt ttcccgcatt tcaacatatc acctattttt gtcctcaaag
3301 gttacttaaa tgttttccac agaattaaat taaatatgaa tcatccctcc tctgattttt
3361 gaaatgaccc tttgcttcct atgataatga ttcttctggt ccgttttgta gttatatgtt
3421 agagtttgta aatagtcaca cattttgcaa ctgcatataa ttttcttatt attttttcct
3481 cttcctctaa aactgctgtt atttctttta actttttgtg ggaaaaatta aacccatctt
3541 tcactttgtt gatatactta tttataattg aactccttga tttttgctcg aattgctttt
3601 caagttaccc acttttaggg aagacattat ttgggttttg tttagtgtat caggcttttt
3661 ttagttagtt gtatcaagaa gtgtagactt ttctatacat aatatccttt ttcccacagt
3721 attttttttt ttttaaagtc tagccaggtg cagtggctca cgcctgtaat cccagacttt
3781 gggaggccga ggccggcgga tcacgaggtc aagagatgga gaccatcctg gctaacacgt
3841 tgaaaccccg tctttactaa aaatacaaaa aattagctgg acatggtaac gggtgcctgt
3901 ggtcccagct aatcgggagg ctgaggcagg agaatggcat gaacccggga ggcagaggtt
3961 gcagtgagcc gagatcgtgc cactgcactc cagcctgggt gacagagcaa gactccatct
4021 caaaaaaaaa aaaaaaaaat tatgttaaaa taaaggtcat caaaagatat tttcctaaaa
4081 aaaaaaaaaa aaaaa
//