LOCUS BC024039 3494 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tripartite motif-containing 26, mRNA (cDNA clone
MGC:12710 IMAGE:3954669), complete cds.
ACCESSION BC024039
VERSION BC024039.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3494)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3494)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: m Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 60279912.
FEATURES Location/Qualifiers
source 1..3494
/db_xref="H-InvDB:HIT000050878_06"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12710 IMAGE:3954669"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3494
/gene="TRIM26"
/gene_synonym="AFP"
/gene_synonym="RNF95"
/db_xref="GeneID:7726"
/db_xref="HGNC:HGNC:12962"
/db_xref="MIM:600830"
CDS 420..2039
/gene="TRIM26"
/gene_synonym="AFP"
/gene_synonym="RNF95"
/codon_start=1
/product="tripartite motif-containing 26"
/protein_id="AAH24039.1"
/db_xref="GeneID:7726"
/db_xref="HGNC:HGNC:12962"
/db_xref="MIM:600830"
/translation="MATSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVR
PISGSRPVCPLCKKPFKKENIRPVWQLASLVENIERLKVDKGRQPGEVTREQQDAKLC
ERHREKLHYYCEDDGKLLCVMCRESREHRPHTAVLMEKAAQPHREKILNHLSTLRRDR
DKIQGFQAKGEADILAALKKLQDQRQYIVAEFEQGHQFLREREEHLLEQLAKLEQELT
EGREKFKSRGVGELARLALVISELEGKAQQPAAELMQDTRDFLNRYPRKKFWVGKPIA
RVVKKKTGEFSDKLLSLQRGLREFQGKLLRDLEYKTVSVTLDPQSASGYLQLSEDWKC
VTYTSLYKSAYLHPQQFDCEPGVLGSKGFTWGKVYWEVEVEREGWSEDEEEGDEEEEG
EEEEEEEEAGYGDGYDDWETDEDEESLGDEEEEEEEEEEEVLESCMVGVARDSVKRKG
DLSLRPEDGVWALRLSSSGIWANTSPEAELFPALRPRRVGIALDYEGGTVTFTNAESQ
ELIYTFTATFTRRLVPFLWLKWPGTRLLLRP"
BASE COUNT 844 a 945 c 991 g 714 t
ORIGIN
1 aggaggggtg ccggccggga ttcgcggccc ggagctcggg accggagtca ggaatggaga
61 gaagggtaat ggttttacct cttattgtgg aaacctgttg agatcacaga gaatatactg
121 acggcataaa agggcagaac catagcaggg tgcggttgct tcattccagc ctcgcagtca
181 cctctgtgcc ctgctggttg tcttcccagc gctgctgtag ttgccttcca tggatctata
241 ggagagcaag tcctccagga gctggtggtg tctgtcgatt gactgagtgc tggagctggc
301 agccctgtgc aggctgccac ctttgcccct ttactgtgct tgctcctgac tctatgtcgc
361 gtctccaagg agaagaagtc ctcaccagtg aacggagacc tctctgaact aaggatacca
421 tggccacgtc agccccacta cggagcctgg aagaggaggt gacctgctcc atctgtcttg
481 attacctgcg ggaccctgtg accattgact gtggccacgt cttctgccgc agctgcacca
541 cagacgtccg ccccatctca gggagccgcc ccgtctgccc actctgcaag aagcctttta
601 agaaggagaa catccgaccc gtgtggcaac tggccagcct ggtggagaac attgagcggc
661 tgaaggtgga caagggcagg cagccgggag aggtgacccg ggagcagcag gatgcaaagt
721 tgtgcgagcg acaccgagag aagctgcact actactgtga ggacgacggg aagctgctgt
781 gcgtgatgtg ccgggagtcc cgggagcaca ggccccacac ggccgtcctc atggagaagg
841 ccgcccagcc ccacagggaa aaaatcctga accacctgag taccctaagg agggacagag
901 acaaaattca gggcttccag gcaaagggag aagctgatat cctggccgcg ctgaagaagc
961 tccaggacca gaggcagtac attgtggctg agtttgagca gggtcatcag ttcctgaggg
1021 agcgggagga acacctgctg gaacagctgg cgaagctgga gcaggagctc acggagggca
1081 gggagaagtt caagagccgg ggcgtcgggg agcttgcccg gctggccctg gtcatctccg
1141 aactggaggg caaggcgcag cagccagctg cagagctcat gcaggacacg agagacttcc
1201 taaacaggta tccacggaag aagttctggg ttgggaaacc cattgctcga gtggttaaaa
1261 aaaagaccgg agaattctca gataaactcc tctctctgca acgaggcctg agggaattcc
1321 aggggaagct gctgagagac ttggaatata agacagtgag cgtcaccctg gacccacagt
1381 cggccagtgg gtacctgcag ctgtcagagg actggaagtg cgtgacctac accagcctgt
1441 acaagagtgc ctacctgcac ccccagcagt ttgactgtga gcctggggtg ctaggcagca
1501 agggcttcac ctggggcaag gtctactggg aagtggaagt ggagagggag ggctggtctg
1561 aggatgaaga agagggggat gaggaggaag agggagaaga ggaggaggag gaagaggagg
1621 ccggctatgg ggatggatat gacgactggg aaacggacga agatgaggaa tcgttgggcg
1681 atgaagagga agaagaggag gaggaagagg aggaagttct ggaaagctgc atggtggggg
1741 tggctagaga ctctgtgaag aggaagggag acctctccct gcggccagag gatggcgtgt
1801 gggcgctgcg cctctcctcc tccggcatct gggccaacac cagccccgag gctgagcttt
1861 tcccagcact gcggccccgg agagtgggca tcgccctgga ttatgaaggg ggcaccgtga
1921 ctttcaccaa cgcagagtca caggaactca tctacacctt cactgccacc ttcacccggc
1981 gcctggtccc cttcctgtgg ctcaagtggc caggaacacg cctcctgcta agaccctgag
2041 ccctgacatc tgcccccagc cccaaccctc agatgcttca cttctttgga attccaggac
2101 tctcaatggg gggacgggat gcctggccta agcacctgga gcaggggacc ccatatccac
2161 tggtagccac ctccccattg ctgtggcccc ctgaaatctc actcagtgct gttgctccat
2221 ctactgccct aatggggctc ttttcccacc tcctgctggt ttcccgaggg aacttctgac
2281 cctggagtcc atgagggctc ctttcctttt tgaccacgac cttggcccca gctctgcact
2341 ctctggaata agggcccgat gcagcatttt cttgcccagt gtggcaagac ctcagaaaaa
2401 ccagtcaatt acgcctaaga tcattttgct gtccttaaac cccccaggtt ccttcttgca
2461 caaatccact ctgctgccca ccttccctgg cattttaaac agacctaccc caccccaact
2521 cagagttaag catacatggc aatgctgaaa ataaacaaaa tccactgagg cttcccaggc
2581 catttaaagc ctggagtacc agcgcatatc atctcatggg gtccagagtg gagtccaggc
2641 ttctctgaaa ccagggctga gcatatttcc atagccaagg aggtgggact ccctggagct
2701 atctgtggtc ttagggaagg atccagacat acacggcttt ggggtacaag ctgtgatcac
2761 tgatcaataa attatctcta gattggtcct tgtgagggga gttttaagaa tccagaacat
2821 cttgctcttg atcagcacat ccaaaaacac caagacaaac atccagtgga gcagaacctc
2881 tcctgcctcg ggagttctga ccgggttccc cagcagggtg ttaagcctct gtctctggcc
2941 ctaccagcat ccaggttcca ctttcctagg agagagtgga gatgggaaga cagggaaagg
3001 aaggcagcag gaggccacaa gcccaccagg tcttcatgtc aagagaggga gtaacatgtc
3061 ttctcattgc ccacggaccc aacctctgtc caggtgcccc tcatcatcac agtttaacac
3121 aagctcccct gctccagcca aattgatctc ccagtcttgt ccttacccat tccaagtgct
3181 ctgccagccc ctgttcatcc aagttttaag tcctccaccc tgttctaaga gactgttcca
3241 acggctctgg gcctcagtgg tcacttgacc accattgtct cagagctgcc cactttgtgt
3301 gtgtcacatg ctgcctgagt cacatgtaca tcttatttct gcctctagtt ttgtaagctc
3361 ctggagggcg gataacatct tatactactc ttgtattctc atggcaccta gtgcagtgct
3421 gggcacagag taggtgctca ataaagactt gttgaatgaa aaaaaaaaaa acaaaaaaaa
3481 aaaaaaaaaa aaaa
//