LOCUS BC024001 3108 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens leucine rich repeat containing 20, mRNA (cDNA clone
MGC:26171 IMAGE:4822655), complete cds.
ACCESSION BC024001
VERSION BC024001.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3108)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3108)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC024001.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: e Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46397368.
FEATURES Location/Qualifiers
source 1..3108
/db_xref="H-InvDB:HIT000039716"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26171 IMAGE:4822655"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3108
/gene="LRRC20"
/gene_synonym="FLJ10751"
/gene_synonym="FLJ10844"
/db_xref="GeneID:55222"
/db_xref="HGNC:HGNC:23421"
CDS 157..711
/gene="LRRC20"
/gene_synonym="FLJ10751"
/gene_synonym="FLJ10844"
/codon_start=1
/product="leucine rich repeat containing 20"
/protein_id="AAH24001.1"
/db_xref="GeneID:55222"
/db_xref="HGNC:HGNC:23421"
/translation="MLKKMGEAVARVARKVNETVESGSDTLDLAECKLVSFPIGIYKV
LRNVSGQIHLITLANNELKSLTSKFMTTFSQLRELHLEGNFLHRLPSEVSALQHLKAI
DLSRNQFQDFPEQLTALPALETINLEENEIVDVPVEKLAAMPALRSINLRFNPLNAEV
RVIAPPLIKFDMLMSPEGARAPLP"
BASE COUNT 665 a 887 c 885 g 671 t
ORIGIN
1 aactgacaac accagtaact aaatatagga gcagatggtg gggacgggct gtcgcagcgg
61 ctcctttgca gaggtctccg gactgcagat aaggctcagg cccttttgtg agaagcagac
121 cagcctgggg gctggcggca ggacacctgt gtctgcatgc tgaagaagat gggtgaggcc
181 gtggccagag tagcaaggaa ggtcaacgag acggtggaga gcggctctga cactctggac
241 ctggccgagt gcaagctggt ctcctttccc attggcatct acaaggtcct gcggaatgtc
301 tctggccaga tccacctcat caccctggct aacaatgagc ttaagtccct caccagcaag
361 ttcatgacca cattcagtca gctccgagag ctccacctgg aggggaactt cctacaccgc
421 ctccccagcg aggtcagtgc cctgcagcac ctcaaggcca ttgacctgtc ccggaaccag
481 ttccaggact tccctgagca gcttaccgcc ctgccggcgc tggagaccat caacctggag
541 gagaacgaga tcgtagatgt gcccgtggag aagctggccg ccatgccagc cttgcgcagc
601 atcaacctcc gcttcaaccc actcaacgcc gaggtgcgcg tgatcgcccc gccgctcatc
661 aagtttgaca tgctcatgtc tccggaaggc gcaagagccc ccctacctta ggccaccctc
721 ctcatgccca cccagcaagg gacagaggcc acaggcctgg aaccctggaa gggagggagg
781 cccatgggag gccaagcctg ggggctgggg gcgggtgggc cgagcagcac gtggtgggtg
841 gggtgcagct ggtctggata gatagcttac agcagtagtg ggctctggaa tgcccaaggg
901 aagaggcaag gtggggcctg cagcctggac tcggcactca cagctgctgt gcaaactcag
961 gcagatctcc tgccctctct gagccttgtc acttgaaaaa aacaggaccc tttccctcct
1021 ttgggctccc tggaggtttt taagcagtac gtgcctccaa gttacctcca gatcagcagg
1081 cacaggtggg cattgccagg tattttctga gcccctgcgg gtttgaggcc ttgtttttag
1141 tgctgagagc cagttgctgc cctgagaaga gaagacaacc tccatctatt tattgcttcc
1201 tgagaactga cctggatgcg gccctctgca gggcccagtc ttcagtcctg tggtccctgg
1261 actggtggga acctgaacta ggagtcctgg gagagctgtg gtgggaatat gggctggcac
1321 tgctgcaggg caagaacatt catgtaggag cccgaggacc agcaggctgg gaatggggag
1381 caagtcacgt cagctctgtc attccccaca gttaacaaat tggcggggtg ggaagtcctg
1441 agtgctccgt ccctctagca tcactcctga gctgcgggag aggtggccca gagaacagca
1501 gagtcagtta cacctgcagc tcttgtctaa agtgattaga tggccaccct caccactgtc
1561 cagtccagca gcagcctggc tgccttgtca tggcctcctg ggggcagaag gcgatgtgga
1621 ccacgggatt tgtagccagc cagctcccag gccaacgccc aaagccctga tgacctggtt
1681 cttctgaggc cctcaacctg gcatcttagg gtatggtcag gcaacagggt gaccagctgt
1741 cctggtttcc caggacatgg aactttcaat gctaaaactg ggacagtacc cagcaagtgg
1801 ggatggttgg tcccctacca ggagagggcc tggggctctt gcttcccgag aacgcctgtg
1861 gcttgaagaa ccttgactgc ttggtcctca ggtatctacc tcccaccttc tcctcatctg
1921 tggagcaagc caactcagtg ccccagaccc cacctgatct gcatctttgt ttgcatctcc
1981 agagacacct gaggccccag agcttgaggc aaagccaggc cgtccaaatc ctgtgtgccg
2041 tggacgagtg gccactttac tactcctaag gctaagatgt tgagagctca gaccactgct
2101 cagagcagta atccctgctc agaatgctcc cagttccctc gtccctgccc aggtctcttg
2161 tctcttggga aggaactgat aggtcgggcc attgttgggc catcactgag cgctcagtat
2221 ctcaagagac tctgttcatt ctgctcgtat cccaaggcct ggttggtcaa actctgggca
2281 aagggttttc aggatgagga ggtcaagaca ggatctccag agctaccgag ttcatctgtg
2341 ggtgttgggg gcaagtgggg gctgaagtcc tgtgcaggct gcgctggccc cacctgcctt
2401 gtgccctgga gtggggtttc tccttgttga agaagaggca tccttctctg atgtgcacaa
2461 acacaatgta tgaccagagc cttgcaactc aaagtgtggt ctgtggacca gcagcggcag
2521 tgacacctgg gagcttgtta ggaatgcaga gtctaggcct caccctatac ctcccgactc
2581 agaccctgca ttttagcaag acccccagct gattcctata agcactttag agtttgagaa
2641 gcaaggacct aggctgggga tgtcctccga gcagagggtg aagtttctct cagttctctc
2701 cctgccactt ccagggatct gagcctgtgc tcagcctcct ccctaaccca ccctgggaga
2761 cacttggcct gttagattgt tccagagtct gcatggcact cctgaagaag ggagtgtgac
2821 ctgcagtcac caggagatga gggttaggtg tgcccagccc tccagacccg gcctttctgg
2881 ttaacccctg catgccaagc tgcctgctgc cccaggtcct cacctcaggc ctttgaaggg
2941 gcagcttctg gaagttgttt tctcctctgc ttggagagtt tgcccttgtc tgtcttggaa
3001 agtgtgggca gccacagatg cccccaaatc agagctcaca gtgagtgagc ccctaagctt
3061 cagtctgcaa taaagaatgc attggtttca tcaaaaaaaa aaaaaaaa
//