LOCUS BC023542 2679 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sortilin 1, mRNA (cDNA clone MGC:15104 IMAGE:4123836), complete cds. ACCESSION BC023542 VERSION BC023542.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2679) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2679) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 26 Row: e Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 52352810. FEATURES Location/Qualifiers source 1..2679 /db_xref="H-InvDB:HIT000050816" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:15104 IMAGE:4123836" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2679 /gene="SORT1" /gene_synonym="Gp95" /gene_synonym="NT3" /db_xref="GeneID:6272" /db_xref="HGNC:HGNC:11186" /db_xref="MIM:602458" CDS 50..2545 /gene="SORT1" /gene_synonym="Gp95" /gene_synonym="NT3" /codon_start=1 /product="sortilin 1" /protein_id="AAH23542.1" /db_xref="GeneID:6272" /db_xref="HGNC:HGNC:11186" /db_xref="MIM:602458" /translation="MERPWGAADGLSRWPHGLGLLLLLQLLPPSTLSQDRLDAPPPPA APLPRWSGPIGVSWGLRAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLANNTHQ HVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITDL INNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLT QMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGS CKADLGALELWRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQG DTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDR HLYTTTGGETDFTNVTSLRGVYITSVLSEDNSIQTMITFDQGGRWTHLRKPENSECDA TAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMVPDVYIS DDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFTRDP IYFTGLASEPGARSMNISIWGFTESFLTSQWVSYTIDFKDILERNCEEKDYTIWLAHS TDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVTKQPSICLCSLEDFLCDFGYYRP ENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGDKCQGGVNPVREVKDLKKKC TSNFLSPEKQNSKSNSVPIILAIVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQH AEANGVDGVDALDTASHTNKSGYHDDSDEDLLE" BASE COUNT 694 a 648 c 707 g 630 t ORIGIN 1 ggcgggcgcg ccgggcggca ggtgtcggcg tcggcggcat tcggcggcga tggagcggcc 61 ctggggagct gcggacggcc tctcgcgctg gccccatggc ctcggcctcc tcctcctcct 121 gcagctgctg ccgccgtcga ccctcagcca ggaccggctg gacgcgccgc cgccgcccgc 181 tgcgccgctg ccgcgctggt ctggccccat cggggtgagc tgggggctgc gggcggccgc 241 agccgggggc gcgtttcccc gcggcggccg ttggcgtcgc agcgcgccgg gcgaggacga 301 ggagtgcggc cgggtccggg acttcgtcgc caagctggcc aacaacacgc accagcatgt 361 gtttgatgat ctcagaggct cagtatcctt gtcctgggtt ggagatagca ctggggtcat 421 tctagtcttg actaccttcc atgtaccact ggtaattatg acttttggac agtccaagct 481 atatcgaagt gaggattatg ggaagaactt taaggatatt acagatctca tcaataacac 541 ctttattcgg actgaatttg gcatggctat tggtcctgag aactctggaa aggtggtgtt 601 aacagcagag gtgtctggag gaagtcgtgg aggaagaatc ttcagatcat cagattttgc 661 gaagaatttt gtgcaaacag atctcccttt tcatcctctc actcagatga tgtatagccc 721 tcagaattct gattatcttt tagctctcag cactgaaaat ggcctgtggg tgtccaagaa 781 ttttggggga aaatgggaag aaatccacaa agcagtatgt ttggccaaat ggggatcaga 841 caacaccatc ttctttacaa cctatgcaaa tggctcctgc aaagctgacc ttggggctct 901 ggaattatgg agaacttcag acttgggaaa aagcttcaaa actattggtg tgaaaatcta 961 ctcatttggt cttgggggac gtttcctttt tgcctctgtg atggctgata aggataccac 1021 aagaaggatc cacgtttcaa cagatcaagg ggacacatgg agcatggccc agctcccctc 1081 cgtgggacag gaacagttct attctattct ggcagcaaat gatgacatgg tattcatgca 1141 tgtagatgaa cctggagaca ctgggtttgg cacaatcttt acctcagatg atcgaggcat 1201 tgtctattcc aagtctttgg accgacatct ctacactacc acaggcggag agacggactt 1261 taccaacgtg acctccctcc gcggcgtcta cataacaagc gtgctctccg aagataattc 1321 tatccagacc atgatcactt ttgaccaagg aggaaggtgg acgcacctga ggaagcctga 1381 aaacagtgaa tgtgatgcta cagcaaaaaa caagaatgag tgcagccttc atattcatgc 1441 ttcctacagc atctcccaga aactgaatgt tccaatggcc ccactctcag agccgaatgc 1501 cgtaggcatt gtcattgctc atggtagcgt gggggatgcc atctcagtga tggttccaga 1561 tgtgtacatc tcagatgatg ggggttactc ctggacaaag atgctggaag gaccccacta 1621 ttacaccatc ctggattctg gaggcatcat tgtggccatt gagcacagca gccgtcctat 1681 caatgtgatt aagttctcca cagacgaagg tcaatgctgg caaacctaca cgttcaccag 1741 ggaccccatc tatttcactg gcctagcttc agaacctgga gctaggtcca tgaatatcag 1801 catttggggc ttcacagaat ctttcctgac cagccagtgg gtctcctaca ccattgattt 1861 taaagatatc cttgaaagga actgtgaaga gaaggactat accatatggc tggcacactc 1921 cacagaccct gaagattatg aagatggctg cattttgggc tacaaagaac agtttctgcg 1981 gctacgcaag tcatccgtgt gtcagaatgg tcgagactat gttgtgacca agcagccctc 2041 catctgcctc tgttccctgg aggactttct ctgtgatttt ggctactacc gtccagaaaa 2101 tgactccaag tgtgtggaac agccagaact gaagggccac gacctggagt tttgtctgta 2161 cggaagagaa gaacacctaa caacaaatgg gtaccggaaa attccagggg acaaatgcca 2221 gggtggggta aatccagttc gagaagtaaa agacttgaaa aagaaatgca caagcaactt 2281 tttgagtccg gaaaaacaga attccaagtc aaattctgtt ccaattatcc tggccatcgt 2341 gggattgatg ctggtcacag tcgtagcagg agtgctcatt gtgaagaaat atgtctgtgg 2401 gggaaggttc ctggtgcatc gatactctgt gctgcagcag catgcagagg ccaatggtgt 2461 ggatggtgtg gatgctttgg acacagcctc ccacactaat aaaagtggtt atcatgatga 2521 ctcagatgag gacctcttgg aatagctctt cagaggagct ggacccagca tggatggtgg 2581 aaccacagta cctcttacac tccctgtggc tccaacttca ggaaataaat ttcccattgc 2641 gagggaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa //