LOCUS BC023215 3063 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens solute carrier family 8 (sodium/calcium exchanger),
member 3, mRNA (cDNA clone IMAGE:4932133), with apparent retained
intron.
ACCESSION BC023215
VERSION BC023215.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3063)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3063)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: g Column: 16
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..3063
/db_xref="H-InvDB:HIT000090739"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4932133"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 851 a 738 c 697 g 777 t
ORIGIN
1 ggtggacaaa ctgatcaaga agacaaacct ggccttggtt gtggggaccc attcctggag
61 ggaccagttc atggaggcca tcaccgtcag tgcagcaggg gatgaggatg aggatgaatc
121 cggggaggag aggctgccct cctgctttga ctacgtcatg cacttcctga ctgtcttctg
181 gaaggtgctg tttgcctgtg tgccccccac agagtactgc cacggctggg cctgcttcgc
241 cgtctccatc ctcatcattg gcatgctcac cgccatcatt ggggacctgg cctcgcactt
301 cggctgcacc attggtctca aagattcagt cacagctgtt gttttcgtgg catttggcac
361 ctctgtccca ggtgagagtg agaggtgctt gaatttgcaa agaggatttt acctggttca
421 aatgacccct ggactccatc tcattatctt ccacaccatc tcagatctga acttaacaga
481 gcctctgccc ttaaagtgca caaaagtcaa tcaaagagat gaataatgac attagtaatg
541 acagctaata tttcttgagc actttcaatg tgacagacac catgtgtgtt cagcaattta
601 cacatttaca ttttccccct gtaatgtttc ccaaagccct attaaatagg gtaagttatt
661 atccccactt cacagacaaa gaaactgagg cccacagagg ttaagctaca tgcccaagta
721 agtggtccaa tttcttaacc tccacattat gtgagtagac cacaaacagt gaaattaaaa
781 gaatgtagat attgttctcc ttctatttac ctctggcgat ctctgagagg ttaaagatta
841 gccagctcaa agatatcaaa ggagaaatgc ccacatacat tcttggcctc ctctacttgg
901 aaggacactg tgagtacaaa gtatctccta gcaggacagc caaaggaagt tccacagctt
961 ttatcttttt ataggatgaa ttacatactc tttctttttc ttaggaacac tcagagacaa
1021 acagaaagga gcggacattc ctttactcat tgaacaaata tttactgagc acctattatg
1081 cctgttacag tattgtgcta gtttttggga ctatagtgaa aggcaagata cacatgcttc
1141 cttctccacg tggagtttat aatctactga aggaggcaac tctcaactac tgtaattaaa
1201 gttatcttgt taaatcctag gaagaaaaag aaaaggtact gcatacggaa ggaagttggg
1261 cctgaatgta ggagttagca ggtagacagg ggctgcacta gcccaggttc tttacttaat
1321 tcagttaggg gctttggggc ctctgaactc tgaacttctg ccagggagct ggcatcccag
1381 ttgccccaga aagaaacaga gcacatcctc ctgcagggaa gttaggctga atctcatcag
1441 acaggacttt tctggctggg ccaagggaaa tctttcctgt accaagcaaa catatccttc
1501 aagagagtag ctgaattcac atcaaattct aggaaaacct ctttccaaaa ccccagcgca
1561 ggccagcggt attatttgtc cattagtgat gcaagagatt tagctatcgt ggaaatgcat
1621 cagaaggttg gaaattagat ggatgatccc aggaaggcct gtggatgaga tgccctgtga
1681 tctctgttct ccaagccttg ggggacctga actatcagag gggagggagg aaatatgggg
1741 gaaagcatag aggtgggaag aaatatcaga ggatcagaag caaaaaacaa caataacaac
1801 agaaacaaaa acaaacaaac aaacaaaaaa acaaggccat aggcaagaaa gggtaagagg
1861 ttttctctgg gagatctaaa aaaaatggca ataatgaggt aagccaggca gatacctttg
1921 ggcatctcca agtccttgca attggccaag acaacagcta acaacatttg aggctttaag
1981 aaggttaccc tgtgatccac tcatctgatt tagtggcttt ggctgaagct ctttggatat
2041 agttgaaggt atggaaaggg tccttacatg aggactttag ggtcaagtct cttgctaaca
2101 tcctatgtga ccttgggtaa attctttgac ccttattttt cttacctgta aaataaaaga
2161 attgggctag atgtctctga cagtcctccc tgtatctaca atctgtgcca agatctaaag
2221 tcaaacaccc tgcaaggccc tgtgatacat atataaacca caaagacaga gccccgtctt
2281 ccttgagtcc acagttcacc ctgcatgtcc ccatcatggt tccccaacat gtcctctgtc
2341 cccaaaatcc agcacctcac ccagtgctca atcagtaggc attgctcaat aactgttggt
2401 ggttcgtgaa taaatgcccc atatgacagt taaaatcagg catctactcc aagcagcttc
2461 ccagggtgtc aaggttccct ggggagatat tatgggatgg caaacttccc ttactgaaaa
2521 agtagtcaaa ggagaacaat aagcccactc agtaaatatc agaactggaa agcccttcag
2581 aatctttcag atcactgcag atgaggaatg ggaagcccag actagggatg tgacctaccc
2641 agggccacac ggcttgcttg cggcagaact aggagttagg agtggccccc tagcccttgt
2701 ctctcattcc tgggttcagc ccaccagctc aagctgcttt ttgggcatac tggaagacaa
2761 gccctgcaca ccttagcctc ctaccagttc ccatgtgtct ttgtcctttt ccagatacgt
2821 ttgccagcaa agctgctgcc ctccaggatg tatatgcaga cgcctccatt ggcaacgtga
2881 cgggcagcaa cgccgtcaat gtcttcctgg gcatcggcct ggcctggtcc gtggccgcca
2941 tctactgggc tctgcaggga caggagttcc acgtgtcggc cggcacactg gccttctccg
3001 tcaccctctt caccatcttt gcatttgtct gcatcagcgt gctcttgtac cgaaggcggc
3061 cgc
//