LOCUS BC022983 2808 bp mRNA linear HUM 09-DEC-2005 DEFINITION Homo sapiens ligand of numb-protein X 1, mRNA (cDNA clone MGC:29996 IMAGE:4995278), complete cds. ACCESSION BC022983 VERSION BC022983.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2808) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2808) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 42 Row: k Column: 6. FEATURES Location/Qualifiers source 1..2808 /db_xref="H-InvDB:HIT000039687" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:29996 IMAGE:4995278" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_10" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2808 /gene="LNX1" /gene_synonym="MPDZ" /gene_synonym="PDZRN2" /db_xref="GeneID:84708" /db_xref="HGNC:HGNC:6657" /db_xref="IMGT/GENE-DB:6657" /db_xref="MIM:609732" CDS 162..2348 /gene="LNX1" /gene_synonym="MPDZ" /gene_synonym="PDZRN2" /codon_start=1 /product="LNX1 protein" /protein_id="AAH22983.1" /db_xref="GeneID:84708" /db_xref="HGNC:HGNC:6657" /db_xref="IMGT/GENE-DB:6657" /db_xref="MIM:609732" /translation="MNQPESANDPEPLCAVCGQAHSLEENHFYSYPEEVDDDLICHIC LQALLDPLDTPCGHTYCTLCLTNFLVEKDFCPMDRKPLVLQHCKKSSILVNKLLNKLL VTCPFREHCTQVLQRCDLEHHFQTSCKGASHYGLTKDRKRRSQDGCPDGCASLTATAP SPEVSAAATISLMTDEPGLDNPAYVSSAEDGQPAISPVDSGRSNRTRARPFERSTIRS RSFKKINRALSVLRRTKSGSAVANHADQGRENSENTTAPEVFPRLYHLIPDGEITSIK INRVDPSESLSIRLVGGSETPLVHIIIQHIYRDGVIARDGRLLPGDIILKVNGMDISN VPHNYAVRLLRQPCQVLWLTVMREQKFRSRNNGQAPDAYRPRDDSFHVILNKSSPEEQ LGIKLVRKVDEPGVFIFNVLDGGVAYRHGQLEENDRVLAINGHDLRYGSPESAAHLIQ ASERRVHLVVSRQVRQRSPDIFQEAGWNSNGSWSPGPGERSNTPKPLHPTITCHEKVV NIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVEL TEVSRSEAVALLKRTSSSIVLKALEVKEYEPQEDCSSPAALDSNHNMAPPSDWSPSWV MWLELPRCLYNCKDIVLRRNTAGSLGFCIVGGYEEYNGNKPFFIKSIVEGTPAYNDGR IRCGDILLAVNGRSTSGMIHACLARLLKELKGRITLTIVSWPGTFL" BASE COUNT 804 a 666 c 671 g 667 t ORIGIN 1 gctcggttca cccacaagga atgagagctg cctgcctgct gctgcttgga gagccccaga 61 cagtcgcttg aagaggtgtg tggatgtctc ctagatcttg acttgctcct gaggaaatat 121 tgtgtgactg agtttcctgt tatactgctc tccaatccat catgaaccag ccagagtctg 181 ccaacgatcc tgaacccctg tgtgcagtgt gtggccaagc ccactccttg gaggaaaacc 241 acttctacag ctatccagag gaagtggatg atgacctcat ctgccacatc tgcctgcagg 301 ctttgctgga ccccctggac actccgtgtg gacacaccta ctgcaccctc tgcctcacca 361 acttcctggt ggagaaggac ttctgtccca tggaccgcaa gcctctggtt ctgcagcact 421 gcaagaagtc cagcatcctg gtcaacaaac tcctcaacaa gctactggtg acctgcccat 481 tcagggagca ctgcacccag gtgttgcagc gctgtgacct cgagcatcac tttcaaacca 541 gctgtaaagg tgcctcccac tacggcctga ccaaagatag gaagaggcgc tcacaagatg 601 gctgtccaga cggctgtgcg agcctcacag ccacggctcc ctccccagag gtttctgcag 661 ctgccaccat ctccttaatg acagacgagc ctggcctaga caaccctgcc tacgtgtcct 721 cggcagagga cgggcagcca gcaatcagcc cagtggactc tggccggagc aaccgaacta 781 gggcacggcc ctttgagaga tccactatta gaagcagatc atttaaaaaa ataaatcgag 841 ctttgagtgt tcttcgaagg acaaagagcg ggagtgcagt tgccaaccat gccgaccagg 901 gcagggaaaa ttctgaaaac accactgccc ctgaagtctt tccaaggttg taccacctga 961 ttccagatgg tgaaattacc agcatcaaga tcaatcgagt agatcccagt gaaagcctct 1021 ctattaggct ggtgggaggt agcgaaaccc cactggtcca tatcattatc caacacattt 1081 atcgtgatgg ggtgatcgcc agagacggcc ggctactgcc aggagacatc attctaaagg 1141 tcaacgggat ggacatcagc aatgtccctc acaactacgc tgtgcgtctc ctgcggcagc 1201 cctgccaggt gctgtggctg actgtgatgc gtgaacagaa gttccgcagc aggaacaatg 1261 gacaggcccc ggatgcctac agaccccgag atgacagctt tcatgtgatt ctcaacaaaa 1321 gtagccccga ggagcagctt ggaataaaac tggtgcgcaa ggtggatgag cctggggttt 1381 tcatcttcaa tgtgctggat ggcggtgtgg catatcgaca tggtcagctt gaggagaatg 1441 accgtgtgtt agccatcaat ggacatgatc ttcgatatgg cagcccagaa agtgcggctc 1501 atctgattca ggccagtgaa agacgtgttc acctcgtcgt gtcccgccag gttcggcagc 1561 ggagccctga catctttcag gaagccggct ggaacagcaa tggcagctgg tccccagggc 1621 caggggagag gagcaacact cccaagcccc tccatcctac aattacttgt catgagaagg 1681 tggtaaatat ccaaaaagac cccggtgaat ctctcggcat gaccgtcgca gggggagcat 1741 cacatagaga atgggatttg cctatctatg tcatcagtgt tgagcccgga ggagtcataa 1801 gcagagatgg aagaataaaa acaggtgaca ttttgttgaa tgtggatggg gtcgaactga 1861 cagaggtcag ccggagtgag gcagtggcat tattgaaaag aacatcatcc tcgatagtac 1921 tcaaagcttt ggaagtcaaa gagtatgagc cccaggaaga ctgcagcagc ccagcagccc 1981 tggactccaa ccacaacatg gccccaccca gtgactggtc cccatcctgg gtcatgtggc 2041 tggaattacc acggtgcttg tataactgta aagatattgt attacgaaga aacacagctg 2101 gaagtctggg cttctgcatt gtaggaggtt atgaagaata caatggaaac aaaccttttt 2161 tcatcaaatc cattgttgaa ggaacaccag catacaatga tggaagaatt agatgtggtg 2221 atattcttct tgctgtcaat ggtagaagta catcaggaat gatacatgct tgcttggcaa 2281 gactgctgaa agaacttaaa ggaagaatta ctctaactat tgtttcttgg cctggcactt 2341 ttttatagaa tcaatgatgg gtcagaggaa aacagaaaaa tcacaaatag gctaagaagt 2401 tgaaacacta tatttatctt gtcagttttt atatttaaag aaagaataca ttgtaaaaat 2461 gtcaggaaaa gtatgatcat ctaatgaaag ccagttacac ctcagaaaat atgattccaa 2521 aaaaattaaa actactagtt ttttttcagt gtggaggatt tctcattact ctacaacatt 2581 gtttatattt tttctattca ataaaaagcc ctaaaacaac taaaatgatt tgtatacccc 2641 actgaattca agctgattta aatttaaaat ttggtatatg ctgaagtctg ccaagggtac 2701 attatggcca tttttaattt acagctaaaa tattttttaa aatgcattgc tgagaaacgt 2761 tgctttcatc aaacaagaat aaatattttt cagaaaaaaa aaaaaaaa //