LOCUS BC022551 2005 bp mRNA linear HUM 19-JUN-2006 DEFINITION Homo sapiens claudin domain containing 1, mRNA (cDNA clone MGC:26832 IMAGE:4818672), complete cds. ACCESSION BC022551 VERSION BC022551.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2005) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2005) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 32 Row: o Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 11096339. FEATURES Location/Qualifiers source 1..2005 /db_xref="H-InvDB:HIT000039624" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:26832 IMAGE:4818672" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2005 /gene="CLDND1" /gene_synonym="GENX-3745" /gene_synonym="MGC111162" /gene_synonym="MGC3316" /gene_synonym="MGC9861" /db_xref="GeneID:56650" /db_xref="HGNC:HGNC:1322" CDS 53..814 /gene="CLDND1" /gene_synonym="GENX-3745" /gene_synonym="MGC111162" /gene_synonym="MGC3316" /gene_synonym="MGC9861" /codon_start=1 /product="claudin domain containing 1" /protein_id="AAH22551.1" /db_xref="GeneID:56650" /db_xref="HGNC:HGNC:1322" /translation="MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSS DLNKSIWDEFISDEADEKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDV VTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLC ACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCL ACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA" BASE COUNT 595 a 379 c 363 g 668 t ORIGIN 1 agggggtgaa gctggcggag caggaggatg ggcgagcagt ctgaatgcca gaatggataa 61 ccgttttgct acagcatttg taattgcttg tgtgctgagc ctcatttcca ccatctacat 121 ggcagcctcc attggcacag acttctggta tgaatatcga agtccagttc aagaaaattc 181 cagtgatttg aataaaagca tctgggatga attcattagt gatgaggcag atgaaaagac 241 ttataatgat gcactttttc gatacaatgg cacagtggga ttgtggagac ggtgtatcac 301 catacccaaa aacatgcatt ggtatagccc accagaaagg acagagtcat ttgatgtggt 361 cacaaaatgt gtgagtttca cactaactga gcagttcatg gagaaatttg ttgatcccgg 421 aaaccacaat agcgggattg atctccttag gacctatctt tggcgttgcc agttcctttt 481 accttttgtg agtttaggtt tgatgtgctt tggggctttg atcggacttt gtgcttgcat 541 ttgccgaagc ttatatccca ccattgccac gggcattctc catctccttg caggtctgtg 601 tacactgggc tcagtaagtt gttatgttgc tggaattgaa ctactccacc agaaactaga 661 gctccctgac aatgtatccg gtgaatttgg atggtccttc tgcctggctt gtgtctctgc 721 tcccttacag ttcatggctt ctgctctctt catctgggct gctcacacca accggaaaga 781 gtacacctta atgaaggcat atcgtgtggc atgagcaaga aactgcctgc tttacaattg 841 ccatttttat ttttttaaaa taatactgat attttcccca cctctcaatt gtttttaatt 901 tttatttgtg gatataccat tttattatga aaatctattt tatttataca cattcaccac 961 taaatacaca cttaatacca ctaaaattta tgtggtttac tttaagcgat gccatctttc 1021 aaataaacta atctaggtct agacagaaag aaatggatag agacttgaca caaatttatg 1081 aaagaaaatt gggagtagga atgtgaccga aaacaagttg tgctaatgtc tgttagactt 1141 ttcagtaaaa ctaaagtaac tgtatctgtt caactaaaaa ctctatatta gtttctttgg 1201 gaaacctctc atcgtcaaaa ctttatgttc actttgctgt tgtagatagc cagtcaacca 1261 gcagtattag tgctgttttc aaagatttaa gctctataaa attgggaaat tatctaagat 1321 cattttccct aagcattgac acatagcttc atctgaggtg agatatggca gctgtttgta 1381 tctgcactgt gtctgtctac aaaaagtgaa aaatacagtg tttacttgaa attttaactt 1441 tgtaactgca agaattccag ttcagccggg cgaggattag tattattttt aactctccgt 1501 aagattttca gtaccaccaa attgttttgg attttttttc tttcctcttc acataccagg 1561 gttattaaaa gtgtgctttc tttttacatt atattacagt tacaaggtaa aattcctcaa 1621 ctgctattta tttattccag cccagtacta taaagaacgt ttcaccataa tgaccctcca 1681 gagctgggaa acctaccaca agatctaaag ttctggctgt ccattaacct ccaactatgg 1741 tctttatttc ttgtggtaat atgatgtgcc tttccttgcc taaatccctt cctggtgtgt 1801 atcaacatta tttaatgtct tttaattcag tcattttttt ataagtatgt ctataaacat 1861 tgaacttaaa aaaacttatt tatttattcc actactgtag caattgacag attaaaaaaa 1921 tgtaacttca taatttctta ccataacctc aatgtctttt ttaaaaaata aaattaaaaa 1981 tgaaaagaga aaaaaaaaaa aaaaa //