LOCUS BC022505 2698 bp mRNA linear HUM 18-JAN-2007
DEFINITION Homo sapiens vacuolar protein sorting 26 homolog A (S. pombe), mRNA
(cDNA clone MGC:26471 IMAGE:4799288), complete cds.
ACCESSION BC022505
VERSION BC022505.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2698)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2698)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: h Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17978518.
FEATURES Location/Qualifiers
source 1..2698
/db_xref="H-InvDB:HIT000039586"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26471 IMAGE:4799288"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2698
/gene="VPS26A"
/gene_synonym="HB58"
/gene_synonym="Hbeta58"
/gene_synonym="PEP8A"
/db_xref="GeneID:9559"
/db_xref="HGNC:HGNC:12711"
/db_xref="MIM:605506"
CDS 113..1096
/gene="VPS26A"
/gene_synonym="HB58"
/gene_synonym="Hbeta58"
/gene_synonym="PEP8A"
/codon_start=1
/product="vacuolar protein sorting 26 homolog A (S.
pombe)"
/protein_id="AAH22505.1"
/db_xref="GeneID:9559"
/db_xref="HGNC:HGNC:12711"
/db_xref="MIM:605506"
/translation="MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYD
GESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELT
QSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDV
NNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITG
IGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNL
VLVDEEDRRYFKQQEIILWRKAPEKLRKQRTNFHQRFESPESQASAEQPEM"
BASE COUNT 872 a 430 c 540 g 856 t
ORIGIN
1 ggggggcggc ccgaggtcac gtgacggagc gccggagcgg agggagccgg ggctgggagt
61 tctcctgagg gaagaggagt ggagtagggg ggacgcggcg gcggcgttga caatgagttt
121 tcttggaggc ttttttggtc caatttgtga gatcgatatt gttcttaatg atggggaaac
181 caggaaaatg gcagaaatga aaactgaaga tggcaaagta gaaaaacact atctcttcta
241 tgacggagaa tccgtttcag gaaaggtaaa cctagccttt aagcaacctg gaaagaggct
301 agaacaccaa ggaattagaa ttgaatttgt aggtcaaatt gaacttttca atgacaagag
361 taatactcat gaatttgtaa acctagtgaa agaactagcc ttacctggag aactgactca
421 gagcagaagt tatgattttg aatttatgca agttgaaaag ccatatgaat cttacatcgg
481 tgccaatgtc cgcttgaggt attttcttaa agtgacaata gtgagaagac tgacagattt
541 ggtaaaagag tatgatctta ttgttcacca gcttgccacc tatcctgatg ttaacaactc
601 tattaagatg gaagtgggca ttgaagattg tctacatata gaatttgaat ataataaatc
661 aaagtatcat ttaaaggatg tgattgttgg aaaaatttac ttcttattag taagaataaa
721 aatacaacat atggagttac agctgatcaa aaaagagatc acaggaattg gacccagtac
781 cacaacagaa acagaaacaa tcgccaaata tgaaataatg gatggtgcac cagtaaaagg
841 tgaatcaatt ccaataaggc tatttttagc aggatatgac ccaactccaa caatgagaga
901 tgtgaacaaa aaattttcag taaggtactt tttgaattta gtgcttgttg atgaggaaga
961 ccggaggtac ttcaaacagc aggagataat tttatggaga aaagctcctg aaaaactgag
1021 gaaacagaga acaaactttc accagcgatt tgaatctcca gaatcacagg catctgccga
1081 acagcctgaa atgtgaactg aacaggagaa aaaaagaaaa gcaaaaaact cctgtaaccc
1141 ttgagattaa gttcagcagg ttaaagatgg ttgcagctgg agggggcgga aaaaggccaa
1201 aactccatat atgttagtct tcctttatct tacagcgcag catttatttt atgatataat
1261 gaaatgttcg ttcatgtata tacattttta aaagtgcttt ctttgaaaca ctggaacttt
1321 gttaagctgc cttttttttt ttaacttcct actttgatga taagcactca gatatatatc
1381 agcgtaaaca tgaaaaattt tcatgtgagt aggctggtat ttgtaatttt gctttctttc
1441 tgcataatgt tgattataaa tcctctcttt tcaggctaat gattacctct tattctctac
1501 atgcaaaaaa ttaaatattt tgtgttcaaa taaaattaga aaacctgagt ggcctcttgt
1561 gtcctgcaga gatttaaaac atggcatctc aatatttttg agaactacat ttgtttttaa
1621 catatgtgtt tgagaaaagc atatggagtg tttcaccgca ggcacttctg agtaccattc
1681 catggcttcc agaattttat cctctttgag gtcttctgtg ctatgaatat tagatttctt
1741 tccccaaggg attatgtggc aggtcattat ggccttcttt tttttggcca tattaagtaa
1801 cagttttgct atattccagt agtaccgttg tgtgttttct gcaatgtgga gttgacttag
1861 cttggcattt tagatttgtt aaaactattt tttccataaa tactttgaaa cgtatttata
1921 tatttcaatt taaggaatct ttttgccatg tgtatgcaaa tattattttc ttcatacatt
1981 cattttcttt tcaggggaaa attttgggat gggggactca ggaggacctg tgaagcatgt
2041 agttatctag atctgggtaa tttcatgttt attaaactcg aactttggct agttaaactc
2101 atattgaaac ttcatctagt ctcttaattt tttaacacta aattcaagtc atttgtttta
2161 agtctctaaa aaagaagatt gcagtcatcc attcatatgc atggggtctg atcgcaaata
2221 cactaaatgt ggagtgtagg aaccaaaatg aaacctgctg tatggaaact actttcactt
2281 atggttcatt ggtttttgta ccaatatttt ttatgcactt cagtgcaagt cttgtcagtt
2341 aaccttactt tatgagtaag ctaaataacc caaattacat ttctttaaac ctgttttact
2401 actatggcac tttgataaaa tggtcaggaa ccaactttac tggcaaaagg gtccatgtac
2461 caccatgtgc tggagcatct gttctacatg tggatatcta tgaatggtaa tgttttcctt
2521 catgtaagtg cctattcaga gtttcagaat tttaaaatgc caaatatttt catggtcatt
2581 tgcatgtagt aagccagaaa atattcaaag agattttgaa aaccaattgt atttaaccag
2641 cctcaaattg tgcaaccatg atgtataata aagaatttga aacaaaaaaa aaaaaaaa
//