LOCUS BC022454 3488 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens transient receptor potential cation channel, subfamily
M, member 3, mRNA (cDNA clone IMAGE:4817012), partial cds.
ACCESSION BC022454
VERSION BC022454.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3488)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3488)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC022454.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: n Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28274683.
FEATURES Location/Qualifiers
source 1..3488
/db_xref="H-InvDB:HIT000039551"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4817012"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescript"
gene <1..3488
/gene="TRPM3"
/gene_synonym="FLJ11726"
/gene_synonym="KIAA1616"
/gene_synonym="LTRPC3"
/gene_synonym="MLSN2"
/db_xref="GeneID:80036"
CDS <1..1113
/gene="TRPM3"
/gene_synonym="FLJ11726"
/gene_synonym="KIAA1616"
/gene_synonym="LTRPC3"
/gene_synonym="MLSN2"
/codon_start=1
/product="TRPM3 protein"
/protein_id="AAH22454.2"
/db_xref="GeneID:80036"
/translation="QAQKSWIERAFYKRECVHIIPSTKDPHRCCCGRLIGQHVGLTPS
ISVLQNEKNESRLSRNDIQSEKWSISKHTQLSPTDAFGTIEFQGGGHSNKAMYVRVSF
DTKPDLLLHLMTKEWQLELPKLLISVHGGLQNFELQPKLKQVFGKGLIKAAMTTGAWI
FTGGVNTGVIRHVGDALKDHASKSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMS
NPMSKLTVLNSMHSHFILADNGTTGKYGAEVKLRRQLEKHISLQKINTRCLPFFSLDS
RLFYSFWGSCQLDSVGIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCDGSGR
ASDILAFGHKYSEEGGSKYITNLKRERKKEEESKGI"
BASE COUNT 1090 a 712 c 708 g 978 t
ORIGIN
1 caggctcaga aatcctggat agaaagagca ttttataaaa gagaatgtgt ccacatcata
61 cccagcacca aagaccccca taggtgttgc tgtgggcgtc tgataggcca gcatgttggc
121 ctcaccccca gtatctccgt gcttcagaat gagaaaaatg aaagtcgcct ctcccgaaat
181 gacatccagt ctgaaaagtg gtccatcagc aaacacactc aactcagccc tacggatgct
241 tttgggacca ttgagttcca aggaggtggc cattccaaca aagccatgta tgtgcgagta
301 tcttttgata caaaacctga tctcctctta cacctgatga ccaaggaatg gcagttggag
361 cttcccaagc ttctcatctc tgtccatggg ggcctgcaga actttgaact ccagccaaaa
421 ctcaagcaag tctttgggaa agggctcatc aaagcagcta tgacaactgg agcgtggata
481 ttcactggag gggttaacac aggtgttatt cgtcatgttg gcgatgcctt gaaggatcat
541 gcctctaagt ctcgaggaaa gatatgcacc ataggtattg ccccctgggg aattgtggaa
601 aaccaggagg acctcattgg aagagatgtt gtccggccat accagaccat gtccaatccc
661 atgagcaagc tcactgttct caacagcatg cattcccact tcattctggc tgacaacggg
721 accactggaa aatatggagc agaggtgaaa cttcgaagac aactggaaaa gcatatttca
781 ctccagaaga taaacacaag atgcctgccg tttttctctc ttgactcccg cttgttttat
841 tcattttggg gtagttgcca gttagactca gttggaatcg gtcaaggtgt tcctgtggtg
901 gcactcatag tggaaggagg acccaatgtg atctcgattg ttttggagta ccttcgagac
961 acccctcccg tgccagtggt tgtctgtgat gggagtggac gggcatcgga catcctggcc
1021 tttgggcata aatactcaga agaaggcggc tcaaaatata taaccaatct aaaaagagaa
1081 agaaaaaagg aagaggaaag caaaggtatt tagaagtgaa atggtgctag ttgatggcga
1141 atgacggtcc tctcagctga gaggcagggt tccaggggcc agcattggaa gctcagcatc
1201 tgcagtgtcc taccccagct tccttcgact ttacagttgg aatgaacagc ctttaaagag
1261 tcctaacctc ccacttgtct tgattgattt ttactttttt aaagtccttg aattcttcct
1321 caagtgaaat ctcaggtaga ggtgcaatat gtaatacaga caaggtgcgg gtttactctg
1381 tcaaagctgg gataggaggc ctagaccatg attctcaaat tttattctgc atcagaatca
1441 cccagagggc ttgtgaaaat aaatggctat acaggaggaa cgagttgagg agatgtatcg
1501 tacatcatgg ggactatagt caataacaat atattgtata cttgaaaatt gctgagaata
1561 gatttcaagt tttctcacca taataaaatg aaagtatgtg agttaatgca tatgttaatt
1621 agcttgatct agccattcca cagtgtatac acatatcaaa acatacaata aataccgtaa
1681 atacatacaa tttttgtcaa ttagatatgc attttttaaa ataagaggaa aaaactacaa
1741 aaaaaaaaat ctcacaattg ctggctccac ccccagattt tctaattcaa taaatctggt
1801 tgaggtcagg taatttgcat ttcaaaggaa tacttaggcg atgctatgct tttggtccag
1861 agacgatact ttcagaacta ttttcctagg gcctcctttc tgcctggctc tcacctacaa
1921 aggcagctct gaggcagctg tggagctcct cctcaaaatt ccgggggctt ctttgtgaaa
1981 ctccattgaa gacccctgac ctacaggtca agatcacatt cctttgcttg gactcaagat
2041 ccactgtatc ctggcccaag cttttctcta gagccagctc tcactcaaca aaccttccat
2101 tcaccctaca acccaatgga gctgtcctcc ccactgttct ccaagcactt cctgctgtca
2161 caaggcttct ctgccttacc atgagatgca caaatgcatt tctttaccca tttaatttct
2221 agtaaatttt tctctgaagt ttcacaaact agcctctctg acaaaaagat gtagtaaggg
2281 ctttaaaacc cacaaattta tctgagtgag gtgcaaataa taaaatgtac tggtgtttca
2341 ttcctttcct ttagaggaaa tagattctga atcaacctgg ctgacattag gatctacagc
2401 tgctagggat acagtggatt aatgccttac ctagtggtat tattaataat aaataatgtt
2461 tgggatgttt ttaatggatt ttctccagat tcctcatgca attctcagat gttggtcacg
2521 gaccacagga tttatgaaaa ctatatagag cagtgaacac atgctataaa ggcttcttca
2581 gtcagagaaa cactaaaaat gcattaaagt aggatttcaa gattaactca agtctgcact
2641 actgttgtct agaaaagtct ccattcagtt tcaataacat ctttttgcac tatcctaatt
2701 gttggacaac tctcttagag tcgatgtaca tatttattat gttttcttgg gatattccat
2761 gcaaagcaag tgtccattca tgagcataaa cctctaaaag tcttgagtaa gcagtaaata
2821 atccattcct ctaaatccat agaaccatga ttcagtgtct tggagacaaa cttaaaattt
2881 ggagttgttt aagcctatca tctccttggt ttttgccatt tgatagtaaa tttgagattt
2941 tattatctct aatgcattga tgacaaatac agttgaccct tgaatgacat gaggttagag
3001 ttgccaaccc cccatgtggt caaaaatcca tgtataactt ttgacttccc aaaaacgtaa
3061 ctactaatag ttcatcattg gccaaaagcc ttactagtaa catatcaaca tatattttgt
3121 atgttacatg tataatatat ttttacaata aagtaagcta gagaaaagaa aatattgaga
3181 aaaccataag gaagagaaaa tatatttact attcattaag tggaagagat catcataaag
3241 gtcttcatca ttgtcgtttt catattgaat aggctgaaga ggaggaggaa gaagaggagg
3301 ggttggtctt gctatctcag gggtggcaga ggaagaaaaa aaattagagt gtaagtgaac
3361 ccgcacagtt caaacccctg ttgttcaagg gtaaactgta gtttaaatct gagtgtcaac
3421 tccaataaat tggtagaggc ttcctggaaa aaaaaaaaaa aaaaaaaaaa aagaaaaaaa
3481 aaaaaaaa
//