LOCUS BC022191 3017 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens regulatory factor X, 3 (influences HLA class II
expression), mRNA (cDNA clone MGC:3664 IMAGE:3531443), complete
cds.
ACCESSION BC022191
VERSION BC022191.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3017)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3017)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC022191.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: j Column: 3.
FEATURES Location/Qualifiers
source 1..3017
/db_xref="H-InvDB:HIT000039410"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3664 IMAGE:3531443"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3017
/gene="RFX3"
/gene_synonym="bA32F11.1"
/db_xref="GeneID:5991"
/db_xref="HGNC:HGNC:9984"
/db_xref="MIM:601337"
CDS 312..2561
/gene="RFX3"
/gene_synonym="bA32F11.1"
/codon_start=1
/product="regulatory factor X, 3 (influences HLA class II
expression)"
/protein_id="AAH22191.1"
/db_xref="GeneID:5991"
/db_xref="HGNC:HGNC:9984"
/db_xref="MIM:601337"
/translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQ
TVQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQ
VTTVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIE
MAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLD
PVNAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQ
QPMQQKQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFG
EVEISSLPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPT
DGTTITESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRP
IPSALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQA
ARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTL
EQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFH
LIRLLYDEYMFYLVEHRVAQATGETPIAVMGEFGDLNAVSPGNLDKDEGSEVESEMDE
ELDDSSEPQAKREKTELSQAFPVGCMQPVLETGVQPSLLNPIHSEHIVTSTQTIRQCS
ATGNTYTAV"
BASE COUNT 897 a 700 c 643 g 777 t
ORIGIN
1 cgtgcgagtg tctccctctc cctctcgctc tctctctctc tccctctctc tctctctttt
61 gtgagttata gcaaccgtgc cttgtgaatc aagcgccata gtcaccgtag tcctggcgac
121 tgttacccat caacaacaac tactcctctc ctcctcctcc tcctctacct cctcctcctc
181 cccaccacca ccatctccat cacccaccaa caacaccaca ataatccaca gccaaggcca
241 cttggtcatt ctggcatttt atggtagaga atacgttgag tttggctctg gaaggaatat
301 gagagaccat catgcagaca tcagagactg ggtcggacac aggctcgaca gtgaccttac
361 aaacatctgt ggctagtcaa gcagcagtgc ctacgcaggt ggtacagcaa gtaccagtac
421 aacaacaggt acagcaggta cagactgtgc agcaggtaca acatgtctat cccgctcagg
481 tgcagtatgt ggaaggaagc gatactgtct ataccaatgg agcaatccga acaacaacgt
541 atccttacac agagacacag atgtacagcc aaaatactgg agggaattac tttgatactc
601 aagggagttc cgcccaggtg actaccgtgg tctcatccca cagtatggtg ggcactggtg
661 ggattcagat gggcgtcaca ggaggacaac tcatcagcag ctctggagga acctatctga
721 tcggcaactc aatggagaat tctggtcact cagtgacaca cacaactcgg gcctccccag
781 cgacaattga aatggcgatt gagacgctgc aaaagtctga cggtctgtcc actcacagaa
841 gctctcttct caacagccat ctccagtggc tgttggacaa ttatgagaca gcagaaggag
901 tgagccttcc cagaagcact ctgtacaacc actaccttcg acactgtcag gaacacaaac
961 tggacccagt caatgctgcc tcttttggaa aattaataag atcaattttt atggggctac
1021 gaaccaggag attgggcact agaggaaact ccaaatacca ctactatggg attcgtgtca
1081 agccagattc ccctcttaat cgtctgcaag aagacatgca gtatatggct atgagacaac
1141 aacccatgca acagaaacaa aggtacaagc ctatgcagaa agtggatggg gttgcagatg
1201 gtttcacagg aagtggtcaa cagacaggca catctgttga gcaaactgta attgcccaaa
1261 gccaacatca tcaacagttt ttagatgcat ctcgagcact tccagagttt ggagaagttg
1321 aaatctcttc tctgccagat ggtactacct ttgaggatat caagtcactg cagagtcttt
1381 atagagagca ctgtgaggca atattggacg ttgttgtgaa tcttcaattt agcctgatag
1441 aaaaattgtg gcaaacattc tggcgctatt ctccctctac tccaactgat ggcactacca
1501 ttaccgaatc gagcaatctg agtgaaatag aaagtcgact tccgaaagca aagctgataa
1561 ctctgtgcaa acatgagtct atcctgaaat ggatgtgtaa ctgtgaccat gggatgtacc
1621 aggctttggt ggagattctc atccccgacg tccttagacc tattcctagt gccttgaccc
1681 aagccattcg aaattttgca aaaagccttg aaggttggct ttccaatgcc atgaacaata
1741 ttccacagag aatgatacaa accaaggttg ccgctgtaag tgcctttgcc cagactctgc
1801 gaagatacac gtcgcttaat cacctggccc aggcagctcg tgcagtgctt cagaacactt
1861 cccaaatcaa ccagatgctt agtgacctca accgtgtcga ctttgccaat gtccaggagc
1921 aggcttcctg ggtgtgccag tgtgatgaca acatggttca gagactagaa acagacttca
1981 agatgactct tcagcagcag agcaccctgg agcagtgggc tgcgtggctt gacaatgtga
2041 tgatgcaagc actgaaaccc tatgaaggaa gacccagttt tcctaaagcc gccaggcagt
2101 ttctgctaaa atggtctttc tacagctcaa tggttattcg ggacttaacc ttacgcagtg
2161 ctgctagctt tggctccttc cacctgatcc gtctactcta cgacgaatat atgttttact
2221 tagtagaaca tcgtgttgct caggcaacag gagagactcc tatagcagtc atgggcgagt
2281 ttggtgattt aaatgccgtg tctcctggaa atctggataa agatgaaggc agtgaagtag
2341 aaagtgaaat ggatgaagaa ctggatgact cttcagagcc tcaagccaaa agagagaaaa
2401 cagagctgag ccaggcattt ccagtgggct gcatgcagcc tgttctcgag actggcgtgc
2461 aaccaagcct cctgaatcca attcacagcg agcacattgt cacaagtact cagactatca
2521 gacagtgcag cgctacagga aatacctaca ctgcagtcta aagaatatta aagcgtattt
2581 ttccagctta cattaaccct gttgatattg ggcttaagtt gaaaatttaa taagcctgaa
2641 ggtcgactgt tgtcaaattc tatctgtgct gaacattaac tttttggagt tgtgaaatgg
2701 aatgggtgta tgtattttgc cagatctttt tttttaacgt aaacaaatta tttgcttctt
2761 aataatgaat tttttccctt agtttcaggt gtcaagaagg atttttacaa cacttaatgt
2821 caatgttttg ttttcttata attaaaaagt aatttacatt ttttgtagct taaaatattt
2881 tattgttgat tgttagtctt ggtgtatgat ttcatgtgta agttttttaa ttagatgcac
2941 ttctgtgaaa tatcaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3001 aaaaaaaaaa aaaaaaa
//