LOCUS BC022039 1170 bp mRNA linear HUM 06-OCT-2005
DEFINITION Homo sapiens spermatogenesis associated 21, mRNA (cDNA clone
IMAGE:4823419), complete cds.
ACCESSION BC022039
VERSION BC022039.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1170)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1170)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: f Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38348381
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1170
/db_xref="H-InvDB:HIT000090508"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4823419"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1170
/gene="SPATA21"
/gene_synonym="RP11-430L17.3"
/gene_synonym="spergen-2"
/gene_synonym="spergen2"
/db_xref="GeneID:374955"
/db_xref="HGNC:HGNC:28026"
/db_xref="IMGT/GENE-DB:28026"
/db_xref="MIM:28026"
CDS 346..948
/gene="SPATA21"
/gene_synonym="RP11-430L17.3"
/gene_synonym="spergen-2"
/gene_synonym="spergen2"
/codon_start=1
/product="SPATA21 protein"
/protein_id="AAH22039.1"
/db_xref="GeneID:374955"
/db_xref="HGNC:HGNC:28026"
/db_xref="IMGT/GENE-DB:28026"
/db_xref="MIM:28026"
/translation="MDNRNTQMYTEGRTKAPGTQPSPGLRITIKRAGVEPIIPGVSKV
MFPDASEVGSKKHLSSASRGPEKGPRLRDAFEKGPSELRIQEQGPPARPGKKQPSWVP
QEGSQELQAGQDQSELGLLPSWVPEVPEGLQQLGSGKEIKGQQGRQRNRGIGEDQPPE
SCQAGHGGSRLLIPALLEAEGGRSPEVKTSLANMVKPCLY"
BASE COUNT 346 a 290 c 325 g 209 t
ORIGIN
1 agcggagtga caagctgggg gaaatgacac tgtccagtag ttggaggtca cacagcccct
61 tgccttattc tcaaacccta accacatggc tggatattcc tgaaatgcat tcctaaacct
121 ctgctgctga gaataattgg acctgccatc tattcccagt ttaactgccc tgtataccaa
181 acaaatccaa ttcaagccaa caggcaaagt ataggctcag acagagccca tcctatgtgc
241 aaggcggtga gcaggggtgg aaaatctcac tgtgactcat ccagctgatt tctggagcac
301 actaggtgat gcccctcact tggcacccgt gttggcgctg gcatcatgga caatagaaac
361 acccagatgt acacggaggg tagaaccaag gctccaggga cgcagccaag tcctggcctg
421 aggatcacca taaagagggc tggtgttgag cccatcatac caggagtcag caaggtcatg
481 tttccggatg cttcggaagt gggcagcaag aagcacctct catcagcttc acgagggcca
541 gagaaggggc ccagactcag agatgcattt gagaaggggc cttcagagct cagaatccag
601 gagcaggggc ctccagcaag accagggaag aaacagccct cttgggtccc ccaggaaggg
661 tcccaggagc tgcaagcagg ccaggatcag agtgagctgg ggttgctgcc ttcctgggtt
721 cctgaagtac ctgaagggct gcagcagctg ggctccggaa aggagatcaa gggccagcag
781 gggaggcaac ggaaccgggg aatcggggag gatcagcctc ctgagagctg ccaggccggg
841 catggtggct cacgcctgtt aatcccagca cttctggagg ccgaaggagg cagatcacct
901 gaggtcaaga ccagcctggc caacatggta aaaccctgtc tctactaaaa aatataaaat
961 tagccgggtg tggtggcaca tgcctgtaat cccagctact caagaggccg aggcaggaga
1021 attgcttgaa cacgggaggt ggaggttgca gtgagctgag atcgcgccat tgcactccaa
1081 ccagggcaat gagagcaaaa ctccgtctca aaaaaaataa aaataaaata aaaataagtc
1141 ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//