LOCUS BC021926 1931 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cold shock domain protein A, mRNA (cDNA clone
MGC:31931 IMAGE:4551107), complete cds.
ACCESSION BC021926
VERSION BC021926.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1931)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1931)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: d Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21359983.
FEATURES Location/Qualifiers
source 1..1931
/db_xref="H-InvDB:HIT000039306"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31931 IMAGE:4551107"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1931
/gene="CSDA"
/gene_synonym="CSDA1"
/gene_synonym="DBPA"
/gene_synonym="ZONAB"
/db_xref="GeneID:8531"
/db_xref="HGNC:HGNC:2428"
/db_xref="MIM:603437"
CDS 195..1313
/gene="CSDA"
/gene_synonym="CSDA1"
/gene_synonym="DBPA"
/gene_synonym="ZONAB"
/codon_start=1
/product="cold shock domain protein A"
/protein_id="AAH21926.1"
/db_xref="GeneID:8531"
/db_xref="HGNC:HGNC:2428"
/db_xref="MIM:603437"
/translation="MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAA
APAPAAHVAGNPGGDAAPAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKWFNVRN
GYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP
DGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSG
ARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQ
LQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYN
YRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQSSAE"
BASE COUNT 528 a 547 c 500 g 356 t
ORIGIN
1 gcccaagagc gagcgcgcag cacgaagctc gagccgcctc cgccgcgcga ccccacctcg
61 gccgccgccg cctgcgccgc gagatccgcc ccggcctccc cgagagcgag ccccggccgc
121 cgcgaccacc agccgcgcta accgccgacc aaccgccacc gaggcgcctg agcgagagca
181 gaggaggagg aggcatgagt gaggcgggcg aggccaccac caccaccacc accaccctcc
241 cgcaggctcc gacggaggcg gccgccgcgg ctccccagga ccccgcgccc aagagcccgg
301 tgggcagcgg tgcgccccag gccgcggccc cggcgcccgc cgcccacgtc gcaggaaacc
361 ccggtgggga cgcggccccc gcagccacgg gcaccgcggc cgccgcctct ttagccgccg
421 ccgccggcag cgaagacgcg gagaaaaaag ttctcgccac caaagtcctt ggcactgtca
481 aatggttcaa cgtcagaaat ggatatggat ttataaatcg aaatgacacc aaagaagatg
541 tatttgtaca tcagactgcc atcaagaaga ataacccacg gaaatatctg cgcagtgtag
601 gagatggaga aactgtagag tttgatgtgg ttgaaggaga gaagggtgca gaagctgcca
661 atgtgactgg cccggatgga gttcctgtgg aagggagtcg ttacgctgca gatcggcgcc
721 gttacagacg tggctactat ggaaggcgcc gtggccctcc ccggaattac gctggggagg
781 aggaggagga agggagcggc agcagtgaag gatttgaccc ccctgccact gataggcagt
841 tctctggggc ccggaatcag ctgcgccgcc cccagtatcg ccctcagtac cggcagcggc
901 ggttcccgcc ttaccacgtg ggacagacct ttgaccgtcg ctcacgggtc ttaccccatc
961 ccaacagaat acaggctggt gagattggag agatgaagga tggagtccca gagggagcac
1021 aacttcaggg accggttcat cgaaatccaa cttaccgccc aaggtaccgt agcaggggac
1081 ctcctcgccc acgacctgcc ccagcagttg gagaggctga agataaagaa aatcagcaag
1141 ccaccagtgg tccaaaccag ccgtctgttc gccgtggata tcggcgtccc tacaattacc
1201 ggcgtcgccc gcgtcctcct aacgctcctt cacaagatgg caaagaggcc aaggcaggtg
1261 aagcaccaac tgagaaccct gctccaccca cccagcagag cagtgctgag taacaccagg
1321 ctcctcaggc accttcacca tcggcaggtg acctaaagaa ttaatgacca ttcagaaata
1381 aagcaaaaag caggccacaa ccttaaccaa caccaaagaa acatccaagc aataaagtgg
1441 aagactaacc aagatttgga cattggaatg tttactgtta ttctttaaga aacatctaca
1501 aaaagaaaat gtcaacaaat ttttccagca agctgagaac ctgggaattc ctgcacggaa
1561 gacaagagag tagcctctcc agtttcagca accgctaggt ttctattttt tttcctggtt
1621 tttactgttt tggtaatata tatattgaaa caagaaatat taataccaca tggggagaac
1681 cccaaccaaa gaaatctgaa atatatagta aatgcttttt tttccgtttt tgttcatttt
1741 ggatgctggt gctaaacctc caagtgtcat gatttaaaaa aaaaaaaaat ttatgtcctt
1801 cttatttatt tctaggatga ggggaggata acatttttgc tttcttatgt gactctcttt
1861 gaaaatgtgc agtaagaaat tcctcaaaaa taaaattttt acccttcaga ggaaaaaaaa
1921 aaaaaaaaaa a
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