LOCUS BC021905 2804 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens pleckstrin homology domain interacting protein, mRNA
(cDNA clone IMAGE:4341693), partial cds.
ACCESSION BC021905
VERSION BC021905.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2804)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2804)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (18-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: j Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38679895.
FEATURES Location/Qualifiers
source 1..2804
/db_xref="H-InvDB:HIT000090482"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4341693"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2804
/gene="PHIP"
/gene_synonym="ndrp"
/db_xref="GeneID:55023"
/db_xref="HGNC:HGNC:15673"
CDS 116..>2804
/gene="PHIP"
/gene_synonym="ndrp"
/codon_start=1
/product="PHIP protein"
/protein_id="AAH21905.1"
/db_xref="GeneID:55023"
/db_xref="HGNC:HGNC:15673"
/translation="MSCERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKEL
LPRRTDWTGKEHPRTYQNLVKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLG
AGRQSLLRTNKSCKHVVWKGSALAALHCGRPPESPVNYGSPPSIADTLFSRKLNGKYR
LERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLL
ATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFS
PLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPAKFTERPRPGVQMICSSFSAGGM
FLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIW
QFKRREWKSILLDMATRPAGQNLQGIEDKITKMKVTMVAWDRHDNTVITAVNNMTLKV
WNSYTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSYFNM
IEGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSSSKYDKIADQMFFHSDYRPLI
RDANNFVLDEQTQQAPHLMPPPFLVDVDGNPHPSRYQRLVPGRENCREEQLIPQMGVT
SSGLNQVLSQQANQEISPLDSMIQRLQQEQDLRRSGEAGISNTSRLSRGSISSTSEVH
SPPNVGLRRSGQIEGVRQMHSNAPRSEIATERDLVAWSRRVVVPELSAGVASRQEEWR
TAKGEEEIKTYRSEEKRKHLTVPKENKIPTVSKNHAHEHFLDLGESKKQQTNQHNYRT
RSALEETPRPSEEIENGSSSSDEGEVVAVSGGTSEEEERAWHSDGSSSDYSSDYSDWT
ADAGINLQPPKKVPKNKTKKAESSSDEEEESEKQKQKKKK"
BASE COUNT 850 a 581 c 684 g 689 t
ORIGIN
1 gccgaagctc ggctcgtgaa cacacactga cagctatagg gcaggcggcg gcaccgtccc
61 cgcttcccct cggcggcggg gtgtcccgtc ggcggccctg aagtgaccca taaacatgtc
121 ttgtgagagg aaaggcctct cggagctgcg atcggagctc tacttcctca tcgcccggtt
181 cctggaagat ggaccctgtc agcaggcggc tcaggtgctg atccgcgagg tggccgagaa
241 ggagctgctg ccccggcgca ccgactggac cgggaaggag catcccagga cctaccagaa
301 tctggtgaag tattacagac acttagcacc tgatcacttg ctgcaaatat gtcatcgact
361 aggacctctt cttgaacaag aaattcctca aagtgttcct ggagtacaaa ctttattagg
421 agctggaaga cagtctttac tacgcacaaa taaaagctgc aagcatgttg tgtggaaagg
481 atctgctctg gctgcgttgc actgtggaag accacctgag tcaccagtta actatggtag
541 cccacccagc attgcggata ctctgttttc aaggaagctg aatgggaaat acagacttga
601 gcgacttgtt ccaactgcag tgtatcagca catgaaaatg cataaacgaa ttcttggaca
661 cttgtcatct gtgtactgtg taacttttga tcgaactggc agacggatat ttactggttc
721 tgatgactgt cttgtgaaaa tatgggcaac agatgatggg aggttgttag ctaccttaag
781 aggacatgct gctgaaatat cagacatggc tgtaaactat gagaatacca tgatagcagc
841 tggaagttgt gataaaatga tccgagtctg gtgtcttcga acctgtgcac ctttggctgt
901 tcttcagggc catagtgcat ctattacatc actacagttc tcaccattgt gcagtggctc
961 aaagagatat ctatcttcta ctggggcaga tggcactatt tgtttttggc tctgggatgc
1021 tggaaccctt aaaataaacc caagacctgc aaaatttaca gagcgccctc ggcctggagt
1081 tcaaatgatc tgttcttctt ttagtgctgg tggaatgttt ctggcgacgg gaagcacaga
1141 tcatattatt cgggtttatt tttttggatc aggtcagcca gagaaaatat cagaattgga
1201 gtttcatact gacaaagttg acagtatcca gttttccaac actagtaaca ggtttgtaag
1261 tggcagtcgt gatgggacag cacgtatttg gcaatttaaa cgaagagagt ggaagagcat
1321 tttgttggat atggctactc gtccagcagg ccaaaacctt caaggaatag aagataaaat
1381 cacaaaaatg aaggttacta tggtagcttg ggatcgacat gacaatacag ttataactgc
1441 agttaataac atgactctga aagtttggaa ttcttacact ggtcaactaa ttcatgtcct
1501 gatgggtcat gaagatgagg tatttgttct tgaaccacac ccgttcgatc ctagagttct
1561 cttttctgct ggtcatgatg gaaacgtgat agtgtgggat ctggcaagag gagtcaaaat
1621 acgatcttat ttcaatatga ttgaaggcca aggacatggc gcagtatttg actgcaaatg
1681 ctctcctgat ggtcagcatt ttgcatgcac agactctcat ggacatcttt taatttttgg
1741 ctttgggtcc agtagcaaat atgacaagat agcagatcag atgttctttc atagtgatta
1801 tcggccactt attcgtgatg ccaacaattt tgtattagat gaacagactc agcaagcacc
1861 tcatcttatg cctccccctt ttttggttga tgttgatggt aaccctcatc catcaagata
1921 tcaaagatta gttcctggcc gtgaaaattg cagggaggag caactcatcc ctcagatggg
1981 agtaacttcc tcaggactga atcaagtttt aagtcagcaa gcaaaccagg agatcagccc
2041 actggacagc atgattcaaa gactacaaca ggagcaagac ctgagacgtt ctggtgaagc
2101 aggtatcagt aataccagcc gtttaagtag aggctccata agttctacct cagaggttca
2161 ttcaccacca aacgtaggac taagacgtag tggacaaatt gaaggtgtac ggcaaatgca
2221 cagcaacgca ccaagaagtg aaatagccac agagcgggat ctggtagctt ggagtcgaag
2281 ggtggtagta cccgagctat cagctggtgt agccagtagg caagaagaat ggagaactgc
2341 aaagggagaa gaagaaataa agacttacag gtcagaagag aaaagaaaac acttaactgt
2401 tccaaaagag aataaaatac ccactgtctc aaagaatcat gctcatgagc atttcctgga
2461 tcttggagaa tccaaaaagc aacagacaaa tcaacacaat tatcgtacaa gatctgcatt
2521 ggaagagact cctagaccct cagaagagat agaaaatggc agtagttctt cagatgaagg
2581 cgaagtagtt gctgtcagtg gtggaacatc cgaagaagaa gagagagcat ggcacagtga
2641 tggcagttct agtgactact ccagtgatta ctctgactgg acagcagatg caggaattaa
2701 tctgcagcca ccaaagaaag ttcctaagaa taaaaccaag aaagcagaaa gcagttcaga
2761 tgaagaagaa gaatctgaaa aacagaagca aaaaaaaaaa aaaa
//