LOCUS BC021862 2508 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone
IMAGE:5138577), partial cds.
ACCESSION BC021862
VERSION BC021862.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2508)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2508)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (18-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 42 Row: p Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21237801.
FEATURES Location/Qualifiers
source 1..2508
/db_xref="H-InvDB:HIT000090477"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5138577"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2508
/gene="SMARCC1"
/gene_synonym="BAF155"
/gene_synonym="CRACC1"
/gene_synonym="Rsc8"
/gene_synonym="SRG3"
/gene_synonym="SWI3"
/db_xref="GeneID:6599"
/db_xref="HGNC:HGNC:11104"
/db_xref="MIM:601732"
CDS 56..>2508
/gene="SMARCC1"
/gene_synonym="BAF155"
/gene_synonym="CRACC1"
/gene_synonym="Rsc8"
/gene_synonym="SRG3"
/gene_synonym="SWI3"
/codon_start=1
/product="SMARCC1 protein"
/protein_id="AAH21862.1"
/db_xref="GeneID:6599"
/db_xref="HGNC:HGNC:11104"
/db_xref="MIM:601732"
/translation="MAAAAGGGGPGTAVGATGSGIAAAAAGLAVYRRKDGGPATKFWE
SPETVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFT
KLPAKCFMDFKAGGALCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLV
QNNCLTRPNIYLIPDIDLKLANKLKDIIKRHQGTFTDEKSKASHHIYPYSSSQDDEEW
LRPVMRKEKQVLVHWGFYPDSYDTWVHSNDVDAEIEDPPIPEKPWKVHVKWILDTDIF
NEWMNEEDYEVDENRKPVSFRQRISTKNEEPVRSPERRDRKASANARKRKHSPSPPPP
TPTESRKKSGKKGQASLYGKRRSQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNLK
KDSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSRSVDLGEDNVTEQTNHII
IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGL
VPLHLRSPQVPAAQQMLNFPEKNKEKPVDLQNFGLRTDIYSKKTLAKSKGASAGREWT
EQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLA
YQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKK
VQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEKMEADPDGQQPEKAENKVE
NETDEGDKAQDGENEKKKK"
BASE COUNT 761 a 518 c 671 g 558 t
ORIGIN
1 ggaaacaccg cgagggccgg ggtgggccag gctgtgggga cgacgggctg cgacgatggc
61 cgcagcggcg ggcggcggcg ggccggggac agcggtaggc gccacgggct cggggattgc
121 ggcggcagcc gcaggcctag ctgtttatcg acggaaggat gggggcccgg ccaccaagtt
181 ttgggagagc ccggagacgg tgtcccagct ggattcggtg cgggtctggc tgggcaagca
241 ctacaagaag tatgttcatg cggatgctcc taccaataaa acactggctg ggctggtggt
301 gcagcttctt cagttccagg aagatgcctt tgggaagcat gtcaccaacc cggccttcac
361 caaactccct gcaaagtgtt tcatggattt caaagctgga ggcgccttat gtcacattct
421 tggggctgct tacaagtata aaaatgaaca gggatggcgg aggtttgacc tacagaaccc
481 atctcgaatg gatcgtaatg tggaaatgtt tatgaacatt gaaaaaacat tggtgcagaa
541 caattgtttg accagaccca acatctacct cattccagac attgatctga agttggctaa
601 caaattgaaa gatatcatca aacgacatca gggaacattt acggatgaga agtcaaaagc
661 ttcccaccac atttacccat attcttcctc acaagacgat gaagaatggt tgagaccggt
721 gatgagaaaa gagaagcaag tgttagtgca ttggggcttt tacccagaca gctatgatac
781 ttgggtccat agtaatgatg ttgatgctga aattgaagat ccaccaattc cagaaaaacc
841 atggaaggtt catgtgaaat ggattttgga cactgatatt ttcaatgaat ggatgaatga
901 ggaggattat gaggtggatg aaaataggaa gcctgtgagt tttcgtcagc ggatttcaac
961 caagaatgaa gagccagtca gaagtccaga aagaagagat agaaaagcat cagctaatgc
1021 tcgaaagagg aaacattcgc cttcgcctcc ccctccgaca ccaacagaat cacggaagaa
1081 gagtgggaag aaaggccaag ctagccttta tgggaagcgc agaagtcaga aagaggaaga
1141 tgagcaagaa gatctaacca aggatatgga agacccaaca cctgtaccca atatagaaga
1201 agtagtactt cccaaaaatg tgaacctaaa gaaagatagt gaaaatacac ctgttaaagg
1261 aggaactgta gcggatctag atgagcagga tgaagaaaca gtcacagcag gaggaaagga
1321 agatgaagat cctgccaaag gtgatcagag tcgatcagtt gaccttgggg aagataatgt
1381 gacagagcag accaatcaca ttattattcc tagttatgca tcatggtttg attataactg
1441 tattcatgtg attgaacggc gtgctcttcc tgagttcttc aatggaaaaa acaaatccaa
1501 gactccagaa atatacttgg catatcgaaa ttttatgatt gacacgtatc gtctaaaccc
1561 ccaagagtat ttaactagca ctgcttgtcg gaggaacttg actggagatg tgtgtgctgt
1621 gatgagggtc catgcctttt tagagcagtg gggactcgtt aattaccaag ttgacccgga
1681 aagtagaccc atggcaatgg gacctcctcc tactcctcat tttaatgtat tagctgatac
1741 cccctctggg cttgtgcctc tgcatcttcg atcacctcag gttcctgctg ctcaacagat
1801 gctaaatttt cctgagaaaa acaaggaaaa accagttgat ttgcagaact ttggtctccg
1861 tactgacatt tactccaaga aaacattagc aaagagtaaa ggtgctagtg ctggaagaga
1921 atggactgaa caggagaccc ttctactcct ggaggccctg gagatgtaca aggatgattg
1981 gaacaaagtg tcggaacatg ttggaagtcg tactcaggat gaatgcatcc tccacttttt
2041 gagacttccc attgaggacc cataccttga gaattcagat gcttcccttg ggcctttggc
2101 ctaccagcct gtccccttca gtcagtcagg aaatccagtt atgagtactg ttgctttttt
2161 ggcatctgtg gtggaccctc gcgtggcatc tgctgcagca aaagcggctt tggaggagtt
2221 ttctcgggtc cgggaggagg taccactgga attggttgaa gctcatgtca agaaagtaca
2281 agaagcagca cgagcctctg ggaaagtgga tcccacctac ggtctggaga gcagctgcat
2341 tgcaggcaca gggcccgatg agccagagaa gcttgaagga gctgaagagg aaaaaatgga
2401 agccgaccct gatggtcagc agcctgaaaa ggcagaaaat aaagtggaaa atgaaacgga
2461 tgaaggtgat aaagcacaag atggagaaaa tgaaaaaaaa aaaaaaaa
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