LOCUS BC021714 3521 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens PTPRF interacting protein, binding protein 2 (liprin beta 2), mRNA (cDNA clone MGC:26737 IMAGE:4826610), complete cds. ACCESSION BC021714 VERSION BC021714.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3521) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3521) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 33 Row: o Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 57163846. FEATURES Location/Qualifiers source 1..3521 /db_xref="H-InvDB:HIT000039263" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:26737 IMAGE:4826610" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3521 /gene="PPFIBP2" /gene_synonym="Cclp1" /db_xref="GeneID:8495" /db_xref="HGNC:HGNC:9250" /db_xref="MIM:603142" CDS 342..2972 /gene="PPFIBP2" /gene_synonym="Cclp1" /codon_start=1 /product="PTPRF interacting protein, binding protein 2 (liprin beta 2)" /protein_id="AAH21714.1" /db_xref="GeneID:8495" /db_xref="HGNC:HGNC:9250" /db_xref="MIM:603142" /translation="MASDASHALEAALEQMDGIIAGTKTGADLSDGTCEPGLASPASY MNPFPVLHLIEDLRLALEMLELPQERAALLSQIPGPTAAYIKEWFEESLSQVNHHSAA SNETYQERLARLEGDKESLILQVSVITDQVEAQGEKIRDLEVCLEGHQVKLNAAEEML QQELLSRTSLETQKLDLMTEVSELKLKLVGMEKEQREQEEKQRKAEELLQELRHLKIK VEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSRTAALHSESHTERD QEIQRLKMGMETLLLANEDKDRRIEELTGLLNQYRKVKEIVMVTQGPSERTLSINEEE PEGGFSKWNATNKDPEELFKQEMPPRCSSPTVGPPPLPQKSLETRAQKKLSCSLEDLR SESVDKCMDGNQPFPVLEPKDSPFLAEHKYPTLPGKLSGATPNGEAAKSPPTICQPDA TGSSLLRLRDTESGWDDTAVVNDLSSTSSGTESGPQSPLTPDGKRNPKGIKKFWGKIR RTQSGNFYTDTLGMAEFRRGGLRATAGPRLSRTRDSKGQKSDANAPFAQWSTERVCAW LEDFGLAQYVIFARQWVSSGHTLLTATPQDMEKELGIKHPLHRKKLVLAVKAINTKQE EKSALLDHIWVTRWLDDIGLPQYKDQFHESRVDGRMLQYLTVNDLLFLKVTSQLHHLS IKCAIHVLHVNKFNPHCLHRRPADESNLSPSEVVQWSNHRVMEWLRSVDLAEYAPNLR GSGVHGGLIILEPRFTGDTLAMLLNIPPQKTLLRRHLTTKFNALIGPEAEQEKREKMA SPAYTPLTTTAKVRPRKLGFSHFGNIRKKKFDESTDYICPMEPSDGVSDSHRVYSGYR GLSPLDAPELDGLDQVGQIS" BASE COUNT 939 a 900 c 981 g 701 t ORIGIN 1 agcggaggct tcttcggtgc ccgagaggga gcgggtgccc aagggggtgg tccctgtggc 61 aggtcccggg gtgggggcgc ggcgctccgg gaagagcctt ccgcaggtcc ccgccccgtc 121 acgtgggcgc cggccccggc cgctgcggtc ggtccgctgg ttggtcgggc gcttggtccg 181 gcagttggtc ggtgggccag tggcccgtcg ctcgcttctg ggctctcatg tttgaaggtg 241 ggagggacac gggagcggcc cgcacacctg agccgcccgg agaggagcct cggccccgta 301 cccagtaaga agaggaggag gccaggcagg caaaaggagt catggcttct gatgctagtc 361 atgcgctgga agctgccctg gagcaaatgg acgggatcat tgcaggcact aaaacaggtg 421 cagatcttag tgatggtact tgtgagcctg gactggcttc cccggcctcc tacatgaacc 481 ccttcccggt gctccatctc atcgaggact tgaggctggc cttggagatg ctggagcttc 541 ctcaggagag agcagccctc ctgagccaga tccctggccc aacagctgcc tacataaagg 601 aatggtttga agagagcttg tcccaggtaa accaccacag tgctgctagt aatgaaacct 661 accaggaacg cttggcacgt ctagaagggg ataaggagtc cctcatattg caggtgagtg 721 tcatcacaga ccaagtagaa gcccagggag aaaagattcg agacctggaa gtgtgtctgg 781 aaggacacca ggtgaaactc aatgctgctg aagagatgct tcaacaggag ctgctaagcc 841 gcacatctct tgagacccag aagctcgatc tgatgactga agtgtctgag ctgaagctca 901 agctggttgg catggagaag gagcagagag agcaggagga gaagcagaga aaagcagagg 961 agttactgca agagctcagg cacctcaaaa tcaaagtgga agagttggaa aatgaaagga 1021 atcagtatga atggaagcta aaggccacta aggctgaagt cgcccagctg caagaacagg 1081 tggccctgaa agatgcagaa attgagcgtc tgcacagcca gctctcccgg acagcagctc 1141 tccacagtga gagtcacaca gagagagacc aagaaattca acgtctgaaa atggggatgg 1201 aaactttgct gcttgccaat gaagataagg accgtcggat agaggagctt acggggctgt 1261 taaaccagta ccggaaggta aaggagattg tgatggtcac tcaagggcct tcggagagaa 1321 ctctctcaat caatgaagaa gaaccggagg gaggtttcag caagtggaac gctacaaata 1381 aggaccctga agaattattt aaacaagaga tgcctccaag atgtagctct cctacagtgg 1441 ggccacctcc attgccacag aaatcactgg aaaccagggc tcagaaaaag ctctcttgta 1501 gtctagaaga cttgagaagt gaatctgtgg ataagtgtat ggatgggaac cagcccttcc 1561 cggtgttaga acccaaggac agccctttct tggcggagca caaatatccc actttacctg 1621 ggaagctttc aggagccacg cccaatggag aggctgccaa atctcctccc accatctgcc 1681 agcctgacgc cacggggagc agcctgctga ggctgagaga cacagaaagt ggctgggatg 1741 acactgctgt ggtcaatgac ctctcatcca catcatcggg cactgaatca ggtcctcagt 1801 ctcctctgac accagatggt aaacggaatc ccaaaggcat taagaagttc tggggaaaaa 1861 tccgaagaac tcagtcagga aatttctaca ctgacacgct ggggatggca gagtttcgac 1921 gaggtgggct ccgggcaacc gcagggccaa gactctctag gaccagggac tccaagggac 1981 agaaaagtga cgccaatgcc ccctttgccc agtggagcac agagcgtgtg tgtgcatggc 2041 tggaggactt tggcctggct cagtatgtga tctttgccag gcagtgggta tcttctggcc 2101 acaccttatt gacagccacc cctcaggaca tggaaaagga gctaggaatt aagcacccac 2161 tccacaggaa gaagcttgtt ttagcagtga aagccatcaa caccaaacag gaggagaagt 2221 ctgcactgct agaccacatt tgggtgacaa ggtggcttga tgatattggc ttaccccagt 2281 acaaagacca gtttcatgaa tctagagttg acggacgaat gctgcaatac ctaactgtga 2341 acgatttact cttcttaaaa gtcaccagcc aactacatca tctcagcatc aaatgtgcca 2401 ttcacgtgct gcatgtcaac aagttcaacc cccactgcct gcaccggcgg ccagctgatg 2461 agagtaacct ttctccttca gaagttgtac agtggtccaa ccacagggtg atggagtggt 2521 tacgatctgt ggacctggca gagtatgcac ccaatcttcg agggagtgga gtccatggag 2581 gcctcattat cctggagcca cgcttcactg gggacaccct ggctatgctt ctcaacatcc 2641 ccccacaaaa gacgctcctc aggcgccacc tgaccaccaa gttcaatgcc ttgattggtc 2701 cggaggctga acaggaaaag cgagagaaaa tggcctcacc agcttacaca ccactgacca 2761 ccacagccaa agtccggcca aggaaactag gattttcaca cttcggaaac ataagaaaaa 2821 agaagttcga tgaatcgacg gactacattt gcccaatgga gcccagtgac ggtgtcagtg 2881 atagtcacag ggtctacagt ggctaccggg gcctcagccc ccttgatgcc cctgaactgg 2941 atgggctgga ccaggtggga cagattagct gatgcccttg tcacctgccc tctgtgcacc 3001 ctgagagctc acagtaacac tgtgtgtgtc accatataac tgcacctcac ccccgcacgt 3061 gtgcatgact cgcagagaat attccagcaa ttgtgtaccc ctgggccagt ctctttgaac 3121 cctgagggtg gccaggatct ggagctgcat ctctaagggg ccaggctttg gggaccattg 3181 ccaaaggtgg actcaggagg aaagacactt aaagacactt ttacatgtct agtaattctt 3241 gatgttcatc ttcagcacca gtggaaacac atgaacttcg atgcaggtcc agagaccatg 3301 gacactccca cgaggctcag ctctcaggca ccccctacac ttcagttgag ggaaaagctc 3361 aagtgcctta ggcccgtgga ccacagtctt ggctgagatc aaagggatga gcaacaggga 3421 cttctgccac agtgacaatg gaattgtgtt gtgccttact tcagaggtgg tctcttcttt 3481 cttgtaataa aagcaatatt tatgcaaaaa aaaaaaaaaa a //