LOCUS BC021299 1933 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SAM pointed domain containing ets transcription
factor, mRNA (cDNA clone MGC:29592 IMAGE:4546860), complete cds.
ACCESSION BC021299
VERSION BC021299.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1933)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1933)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC021299.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: d Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6912579.
FEATURES Location/Qualifiers
source 1..1933
/db_xref="H-InvDB:HIT000039197"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29592 IMAGE:4546860"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1933
/gene="SPDEF"
/gene_synonym="bA375E1.3"
/gene_synonym="PDEF"
/gene_synonym="RP11-375E1__A.3"
/db_xref="GeneID:25803"
/db_xref="HGNC:HGNC:17257"
/db_xref="MIM:608144"
CDS 412..1419
/gene="SPDEF"
/gene_synonym="bA375E1.3"
/gene_synonym="PDEF"
/gene_synonym="RP11-375E1__A.3"
/codon_start=1
/product="SAM pointed domain containing ets transcription
factor"
/protein_id="AAH21299.1"
/db_xref="GeneID:25803"
/db_xref="HGNC:HGNC:17257"
/db_xref="MIM:608144"
/translation="MGSASPGLSSVSPSHLLLPPDTVSRTGLEKAAAGAVGLERRDWS
PSPPATPEQGLSAFYLSYFDMLYPEDSSWAAKAPGASSREEPPEEPEQCPVIDSQAPA
GSLDLVPGGLTLEEHSLEQVQSMVVGEVLKDIETACKLLNITADPMDWSPSNVQKWLL
WTEHQYRLPPMGKAFQELAGKELCAMSEEQFRQRSPLGGDVLHAHLDIWKSAAWMKER
TSPGAIHYCASTSEESWTDSEVDSSCSGQPIHLWQFLKELLLKPHSYGRFIRWLNKEK
GIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHP
I"
BASE COUNT 409 a 654 c 570 g 300 t
ORIGIN
1 gacttcctcc cagcacattc ctgcactctg ccgtgtccac actgccccac agacccagtc
61 ctccaagcct gctgccagct ccctgcaagc ccctcaggtt gggccttgcc acggtgccag
121 caggcagccc tgggctgggg gtaggggact ccctacaggc acgcagccct gagacctcag
181 agggccaccc cttgagggtg gccaggcccc cagtggccaa cctgagtgct gcctctgcca
241 ccagccctgc tggcccctgg ttccgctggc cccccagatg cctggctgag acacgccagt
301 ggcctcagct gcccacacct cttcccggcc cctgaagttg gcactgcagc agacagctcc
361 ctgggcacca ggcagctaac agacacagcc gccagcccaa acagcagcgg catgggcagc
421 gccagcccgg gtctgagcag cgtatccccc agccacctcc tgctgccccc cgacacggtg
481 tcgcggacag gcttggagaa ggcggcagcg ggggcagtgg gtctcgagag acgggactgg
541 agtcccagtc cacccgccac gcccgagcag ggcctgtccg ccttctacct ctcctacttt
601 gacatgctgt accctgagga cagcagctgg gcagccaagg cccctggggc cagcagtcgg
661 gaggagccac ctgaggagcc tgagcagtgc ccggtcattg acagccaagc cccagcgggc
721 agcctggact tggtgcccgg cgggctgacc ttggaggagc actcgctgga gcaggtgcag
781 tccatggtgg tgggcgaagt gctcaaggac atcgagacgg cctgcaagct gctcaacatc
841 accgcagatc ccatggactg gagccccagc aatgtgcaga agtggctcct gtggacagag
901 caccaatacc ggctgccccc catgggcaag gccttccagg agctggcggg caaggagctg
961 tgcgccatgt cggaggagca gttccgccag cgctcgcccc tgggtgggga tgtgctgcac
1021 gcccacctgg acatctggaa gtcagcggcc tggatgaaag agcggacttc acctggggcg
1081 attcactact gtgcctcgac cagtgaggag agctggaccg acagcgaggt ggactcatca
1141 tgctccgggc agcccatcca cctgtggcag ttcctcaagg agttgctact caagccccac
1201 agctatggcc gcttcattag gtggctcaac aaggagaagg gcatcttcaa aattgaggac
1261 tcagcccagg tggcccggct gtggggcatc cgcaagaacc gtcccgccat gaactacgac
1321 aagctgagcc gctccatccg ccagtattac aagaagggca tcatccggaa gccagacatc
1381 tcccagcgcc tcgtctacca gttcgtgcac cccatctgag tgcctggccc agggcctgaa
1441 acccgccctc aggggcctct ctcctgcctg ccctgcctca gccaggccct gagatggggg
1501 aaaacgggca gtctgctctg ctgctctgac cttccagagc ccaaggtcag ggaggggcaa
1561 ccaactgccc cagggggata tgggtcctct ggggccttcg ggaccctggg gcaggggtgc
1621 ttcctcctca ggcccagctg ctcccctgga ggacagaggg agacagggct gctccccaac
1681 acctgcctct gaccccagca tttccagagc agagcctaca gaagggcagt gactcgacaa
1741 aggccacagg cagtccaggc ctctctctgc tccatccccc tgcctcccat tctgcaccac
1801 acctggcatg gtgcagggag acatctgcac ccctgagttg ggcagccagg agtgcccccg
1861 ggaatggata ataaagatac tagagaactg aaaaaaaaaa aaaaaaaaaa aaaacaaaaa
1921 aaaaaaaaaa aaa
//