LOCUS BC021277 1979 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens transmembrane protein 39A, mRNA (cDNA clone MGC:29509
IMAGE:4857987), complete cds.
ACCESSION BC021277
VERSION BC021277.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1979)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1979)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC021277.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: g Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922755.
FEATURES Location/Qualifiers
source 1..1979
/db_xref="H-InvDB:HIT000039184"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:29509 IMAGE:4857987"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1979
/gene="TMEM39A"
/gene_synonym="FLJ10902"
/db_xref="GeneID:55254"
/db_xref="HGNC:HGNC:25600"
CDS 340..1806
/gene="TMEM39A"
/gene_synonym="FLJ10902"
/codon_start=1
/product="transmembrane protein 39A"
/protein_id="AAH21277.1"
/db_xref="GeneID:55254"
/db_xref="HGNC:HGNC:25600"
/translation="MPGGRRGPSRQQLSRSALPSLQTLVGGGCGNGTGLRNRNGSAIG
LPVPPITALITPGPVRHCQIPDLPVDGSLLFEFLFFIYLLVALFIQYINIYKTVWWYP
YNHPASCTSLNFHLIDYHLAAFITVMLARRLVWALISEATKAGAASMIHYMVLISARL
VLLTLCGWVLCWTLVNLFRSHSVLNLLFLGYPFGVYVPLCCFHQDSRAHLLLTDYNYV
VQHEAVEESASTVGGLAKSKDFLSLLLESLKEQFNNATPIPTHSCPLSPDLIRNEVEC
LKADFNHRIKEVLFNSLFSAYYVAFLPLCFVKSTQYYDMRWSCEHLIMVWINAFVMLT
TQLLPSKYCDLLHKSAAHLGKWQKLEHGSYSNAPQHIWSENTIWPQGVLVRHSRCLYR
AMGPYNVAVPSDVSHARFYFLFHRPLRLLNLLILIEGSVVFYQLYSLLRSEKWNHTLS
MALILFCNYYVLFKLLRDRIVLGRAYSYPLNSYELKAN"
BASE COUNT 469 a 473 c 444 g 593 t
ORIGIN
1 ggaggctagg gatgggtgct gaagtatcag gctctggctc tagctttagc tctggcactg
61 gaactgcgtc ggagtctggg tctgagtctg gcagcccgaa gcctggacac cttttcttga
121 ttctctaggc gggggctgcc tgcgtccaag cagctggttt gcagcgttcc aacgctggga
181 gggagttccc ttacctgggg tccagtctgt aaagttgtcg ccgctttcta gggaccccgc
241 cccaccggct gggactcttc catgcagttg aaactggttg acaaccatta acctgggttg
301 caactacagg tggcactgga agcagactgg ttcctggaca tgcccggtgg aaggaggggc
361 cctagtcggc aacagctaag ccgttcagct ttaccttctt tgcagacttt ggttggtgga
421 ggctgtggca atggaacagg cttgagaaac aggaatggta gtgctattgg ccttccagtc
481 ccacctatca cagccttaat caccccaggt cctgttcgtc attgccaaat tcctgacttg
541 cctgtggatg ggagcctact ctttgaattc ctttttttca tctacctgtt ggttgctctt
601 ttcattcagt acatcaacat ttataaaaca gtgtggtggt atccttacaa tcatcctgct
661 tcttgtacat cactgaattt tcatctcatt gattatcatc tggcagcatt catcacagtg
721 atgcttgcga ggaggcttgt atgggctctc atctcagagg ctactaaggc aggtgcagca
781 tcaatgattc actacatggt tctgatatca gctcgcttgg tactactcac tttgtgtgga
841 tgggtacttt gttggaccct cgtcaatctc tttcgaagcc attcagtcct caatctcctt
901 ttccttggct acccgtttgg tgtttatgtt cctctttgct gttttcatca agatagtaga
961 gcacatcttc ttctcacaga ctacaactat gtggttcagc acgaggcagt agaggaaagt
1021 gcctcgactg tgggaggctt ggccaaatcc aaagactttc tctccttgtt gctggagtcg
1081 ctaaaagaac agtttaataa tgccacaccc atccccaccc acagttgtcc cctatctcca
1141 gacctcattc gcaatgaagt agaatgtctg aaagcagatt tcaaccacag aatcaaggag
1201 gttctcttca actccctctt cagtgcctac tatgttgcat ttctccccct gtgttttgtg
1261 aagagtaccc agtactatga catgcgctgg tcatgtgagc acctcattat ggtgtggatc
1321 aatgcttttg tcatgctcac cacgcaactg ttgccatcca aatactgtga tttgctacat
1381 aaatcagctg ctcacctggg caagtggcag aagttggaac atgggtccta cagcaatgct
1441 ccacagcaca tttggtcaga aaatacaata tggcctcaag gggtgctggt gcggcacagc
1501 agatgtttat atagagccat ggggccttac aacgtggcag tgccttcaga tgtatctcat
1561 gcccgctttt atttcttatt tcatcgacca ttaaggctgt taaatctgct catccttatt
1621 gagggcagtg tcgtcttcta tcagctctat tccttgctgc ggtcggagaa gtggaaccac
1681 acactttcca tggctctcat cctcttctgc aactactatg ttttatttaa acttctccgg
1741 gacagaatag tattaggcag ggcatactcc tacccactca acagttatga actcaaggca
1801 aactaagctg cctctcaaca atgagggaga actcagataa aaatattttc atacgttcta
1861 tttttttctt gtgattttta taaatattta agatatttta tattttgtat actattatgt
1921 tttgaaagtc gggaagagta agggatatta aatgtatccg taaaaaaaaa aaaaaaaaa
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