LOCUS BC021255 1650 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, f
polypeptide (PTPRF), interacting protein (liprin), alpha 3, mRNA
(cDNA clone IMAGE:3528075), partial cds.
ACCESSION BC021255
VERSION BC021255.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1650)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1650)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC021255.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: a Column: 21.
FEATURES Location/Qualifiers
source 1..1650
/db_xref="H-InvDB:HIT000039173"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3528075"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1650
/gene="PPFIA3"
/gene_synonym="KIAA0654"
/gene_synonym="LPNA3"
/db_xref="GeneID:8541"
/db_xref="MIM:603144"
CDS <1..834
/gene="PPFIA3"
/gene_synonym="KIAA0654"
/gene_synonym="LPNA3"
/codon_start=1
/product="PPFIA3 protein"
/protein_id="AAH21255.2"
/db_xref="GeneID:8541"
/db_xref="MIM:603144"
/translation="APASSRTSTGNVWMTHEEMESLTATTKPILAYGDMNHEWVGNDW
LPSLGLPQYRSYFMESLVDARMLDHLNKKELRGQLKMVDSFHRVSLHYGIMCLKRLNY
DRKDLERRREESQTQIRDVMVWSNERVMGWVSGLGLKEFATNLTESGVHGALLALDET
FDYSDLALLLQIPTQNAQARQLLEKEFSNLISLGTDRRLDEDSAKSFSRSPSWRKMFR
EKDLRGVTPDSAEMLPPNFRSAAAGALGSPGLPLRKLQPEGQTSGSSRADGVSVRTYS
C"
BASE COUNT 300 a 523 c 525 g 302 t
ORIGIN
1 gcccccgcct cctcccgcac ttccacagga aacgtgtgga tgacacacga ggagatggag
61 tcccttacgg ccacgaccaa gcccatcctg gcatatggcg acatgaacca cgagtgggtg
121 gggaacgact ggctgcccag cctggggctg ccccaatacc gcagctactt catggagtcg
181 ctggtggacg ctcgaatgtt agatcacctt aacaagaagg agctccgggg ccaactcaag
241 atggtggaca gctttcacag ggtgagtcta cattatggga ttatgtgcct gaaacggctc
301 aactatgacc ggaaggacct ggagcggagg cgggaagaaa gtcagaccca gatccgagac
361 gtgatggtgt ggtccaatga gcgggtcatg ggttgggtgt ccgggctggg cctgaaggaa
421 tttgccacga acctcacgga gagcggggta cacggggcac tgctcgccct ggacgagacc
481 ttcgactact ccgacctggc cttgctcctg cagatcccca cgcagaatgc acaggcccgg
541 cagcttctgg agaaggaatt cagcaacctt atctccttag gcacagacag gcggctggac
601 gaggacagcg ccaagtcttt cagccgctcc ccatcctggc ggaagatgtt ccgggagaag
661 gacctccgag gcgtaactcc cgactcagct gagatgttgc cccccaactt tcgttcggct
721 gcagcgggag ccctgggctc tccggggctc cctctccgca agctgcagcc agaaggccag
781 acttctggga gttcccgggc agacggcgtt tcggtccgga cctattcctg ctagtgcagg
841 cctccaggtg acctcactcg gacggaagaa tcttcccgag gctgggctgt tccctctcct
901 gcccggactg tggcctcgcc ggggagagcg ggcgggggag ctcgcgccga ggactggacc
961 atctgtacag accagcggga gtgcgcgcgc ccgcctcgca cagggccggg gcctggacca
1021 aaccacatga actggactga gagggggaag aagcggggag gaagaaatcc cgccccaaac
1081 gtccgctttc cttttctcta ctttgtaatt tattgatcag tttctgttgg gagacggtgt
1141 cctttacccg cgggaagggg gcggggcttc cctcccgggc cgcatgcggg gagaggctgc
1201 tccctcccct ttttcctgcc cagtcgcggg gcccaagtct tccttcttcg tccgaaagga
1261 ggggaggggg gactcgctgc tacaagcctc gccccctgtg ccactcagct ccgccccgcc
1321 gcgtccggtc gccggtcccc cgggtcatct gcgggcgggg tcccctctcc ctcccccgtg
1381 tctcgtgtcc ccggggcctc accgcccccc gtgctgtggc cgtgtccgtg ccccgggggt
1441 agggggcgca gaatggcgct tccccttctc ctctggctcc ggggtttgca tgggagaatc
1501 ctctttccac gatgccgctg ggcgacgtgg cgtgggggca gggggacggt gggggagccc
1561 tcgcccccga ctctcggtcg gcctccccgc cccaggcgtc actcagtgat cacgggtaaa
1621 gagaactgtt tcaaaaaaaa aaaaaaaaaa
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