LOCUS BC021238 1261 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens schlafen family member 5, mRNA (cDNA clone
IMAGE:3636653), complete cds.
ACCESSION BC021238
VERSION BC021238.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1261)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1261)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: g Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50086625
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1261
/db_xref="H-InvDB:HIT000039163"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3636653"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1261
/gene="SLFN5"
/gene_synonym="MGC19764"
/db_xref="GeneID:162394"
/db_xref="HGNC:HGNC:28286"
CDS 96..1112
/gene="SLFN5"
/gene_synonym="MGC19764"
/codon_start=1
/product="SLFN5 protein"
/protein_id="AAH21238.1"
/db_xref="GeneID:162394"
/db_xref="HGNC:HGNC:28286"
/translation="MSLRIDVDTNFPECVVDAGKVTLGTQQRQEMDPRLREKQNEIIL
RAVCALLNSGGGIIKAEIENKGYNYERHGVGLDVPPIFRSHLDKMQKENHFLIFVKSW
NTEAGVPLATLCSNLYHRERTSTDVMDSQEALAFLKCRTQTPTNINVSNSLGPQAAQG
SVQYEGNINVSAAALFDRKRLQYLEKLNLPESTHVEFVMFSTDVSHCVKDRLPKCVSA
FANTEGGYVFFGVHDETCQVIGCEKEKIDLTSLRASIDGCIKKLPVHHFCTQRPEIKY
VLNFLEVHDKGALRGYVCAIKVEKFCCAVFAKVPSSWQVKDNRVRQLPTREWTAWMME
ADPG"
BASE COUNT 382 a 231 c 333 g 315 t
ORIGIN
1 gaggctccgt tgcctgctcc cggagggaga cgcgctgccg aggagaaccc agcgggagaa
61 catttcagga taggaatagg ccaagtgctg agaagatgag tcttaggatt gatgtggata
121 caaactttcc tgagtgtgtt gtagatgcag gaaaagtcac ccttgggact cagcagaggc
181 aggagatgga ccctcgcctg cgggagaaac agaatgaaat catcctgcga gcagtatgtg
241 ctctgctgaa ttctggtggg ggcataatca aggctgagat tgagaacaaa ggctacaatt
301 atgaacgtca tggagtagga ttggatgtgc ctccaatttt cagaagccat ttagataaga
361 tgcagaagga aaaccacttt ttgatttttg tgaaatcatg gaacacagag gctggtgtgc
421 cacttgctac cttatgctcc aatttgtacc acagagagag aacatccacc gatgtcatgg
481 attctcagga agctctggca ttcctcaaat gcaggactca gactccaacg aatattaatg
541 tttccaattc attaggtcca caggcagctc agggtagtgt acaatatgaa ggtaacataa
601 atgtgtcagc tgctgcttta tttgatagaa agcggcttca gtatctggaa aaactcaacc
661 ttcctgagtc cacacatgtt gaatttgtaa tgttctcgac agacgtgtca cactgtgtta
721 aagacagact tccgaagtgt gtttctgcat ttgcaaatac tgaaggagga tatgtatttt
781 ttggtgtgca tgatgagact tgtcaagtga ttggatgtga aaaagagaaa atagacctta
841 cgagcttgag ggcttctatt gatggctgta ttaagaagct acctgtccat catttctgca
901 cacagaggcc tgagataaaa tatgtcctta acttccttga agtgcatgat aagggggccc
961 tccgtggata tgtctgtgca atcaaggtgg agaaattctg ctgtgcggtg tttgccaaag
1021 tgcctagttc ctggcaggtg aaggacaacc gtgtgagaca attgcccaca agagaatgga
1081 ctgcttggat gatggaagct gacccaggtt agggagcaat atccacaatg gttgtaatgt
1141 ttgctggcag caaggcaggg cgggtcagag aggaaagagg gatatggtat tccttggaat
1201 ctggggaaag agatttactc tctgaaaaaa aaaaaaaaaa aacaaaaaaa aaaaaaaaaa
1261 a
//