LOCUS BC021108 2027 bp mRNA linear HTC 08-DEC-2006 DEFINITION Homo sapiens sorting nexin 17, mRNA (cDNA clone IMAGE:4622841), with apparent retained intron. ACCESSION BC021108 VERSION BC021108.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2027) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2027) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP/Gazdar cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 40 Row: f Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23238249 This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..2027 /db_xref="H-InvDB:HIT000090365" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4622841" /tissue_type="Lung, large cell carcinoma" /clone_lib="NIH_MGC_18" /lab_host="DH10B-R" /note="Vector: pOTB7" BASE COUNT 449 a 529 c 593 g 456 t ORIGIN 1 gggctcccaa aatggcgagt gaggctgcgg ggactcgctg agcagcggag ggggagcgtg 61 cagagccgct gcggccctca cagtccggag cccggccgtg ccgtgccgta gggaacatgc 121 acttttccat tcccgaaacc gagtcccgca gcggggacag cggcggctcc gcctacgtgg 181 cctataacat tcacgtgaat ggagtcctgc actgtcgggt gcgctacagc cagctcctgg 241 ggctgcacga gcagcttcgg aaggagtatg gggccaatgt gcttcctgca ttccccccaa 301 agaagctttt ctctctgact cctgctgagg tagaacagag gagagagcag ttagagaagt 361 acatgcaagc tgttctatag actggactca cctagatggc agccaagggt ggggcaggtg 421 aagaatttat gcaaacagtg agtgagttcg gcaagaccca ttgcttggga gcagcgagac 481 tttcaacagt ttcctgcgtc gggcacaaca ggagacacag caggtcccca cagaggaagt 541 gtccttggaa gtgctgctca gcaacgggca gaaagttctg gtcaacgtgc taacttcaga 601 tcagactgag gatgtcctgg aggctgtagc tgcaaagctg gatcttccag atgacttgat 661 tggatacttt agtctattct tagttcgaga aaaagaggat ggagcctttt cttttgtacg 721 gaagttgcaa gagtttgagc tgccttatgt gtctgtcacc agccttcgga gtcaagagta 781 taagattgtg ctaaggaaga gttattggga ctctgcctat gatgacgatg tcatggagaa 841 ccgggttggc ctgaacctgc tttatgctca gacggtatca gatattgagc gtgggtggat 901 cttggtcacc aaggaacagc accggcaact caaatctctg caagagaaag tctccaagaa 961 ggagttcctg agactggccc agacgctgcg gcactatggc tacttgcgct ttgatgcctg 1021 tgtggctgac ttcccagaaa aggactgtcc tgtggtggtg agcgcgggca acagtgagct 1081 cagcctgcag ctccgcctgc ctggccagca actccgagaa ggctccttcc gggtcacccg 1141 catgcgatgc tggcgggtca cctcctctgt accattgccc agtggaagca cgagcagccc 1201 aggccggggc cggggtgagg tgcgcctgga actggctttt gaatacctca tgagcaagga 1261 ccggctacag tgggtcacca tcactagccc ccaggctatc atgatgagca tctgcttgca 1321 gtccatggtt gatgaactga tggtgaagaa atctggcggc agtatcagga agatgctgcg 1381 ccggcgggtg gggggtactc tgagacgctc agacagccag caagcagtga agtccccacc 1441 actgcttgag tcacctgatg ccacccggga gtctatggtc aaactctcaa gtaagctgag 1501 tgccgtgagc ttgcggggaa ttggcagtcc cagcacagat gccagtgcca gtgatgtcca 1561 cggcaatttc gccttcgagg gcattggaga tgaggatctg taatctccac tgcttggatg 1621 tctgccctct accccagagg aatttacaga aacttgccct gtgcctgtgt cccccatgct 1681 aggggcggag gggtcttttc cttcttcttt cctacctacc ccttttctct tggccagggg 1741 cctcgtatcc tacctttcct tgtcccctgg gctggctgca cagaggattg ccccttctct 1801 tttcagagct ggccctcgat gccaaattag catttagtat tttgcacaaa gtctaaggga 1861 ccatggctgc ctgccttggg gaggaaccat atctccctct gggccgcttc tggcctcttg 1921 gagccatggg ccaaaggcca aggggatggg cagaggtctg tgtttggtct ggcccagttc 1981 cccatcatta aactcagcct gactgctaaa aaaaaaaaaa aaaaaaa //