LOCUS BC020974 3257 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A, mRNA (cDNA clone MGC:9542 IMAGE:3847802), complete cds. ACCESSION BC020974 VERSION BC020974.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3257) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3257) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 20 Row: i Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21361913. FEATURES Location/Qualifiers source 1..3257 /db_xref="H-InvDB:HIT000039061" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:9542 IMAGE:3847802" /tissue_type="Colon, adenocarcinoma" /clone_lib="NIH_MGC_65" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3257 /gene="SEMA4A" /gene_synonym="FLJ12287" /gene_synonym="RP11-54H19.2" /gene_synonym="SEMB" /db_xref="GeneID:64218" /db_xref="HGNC:HGNC:10729" /db_xref="MIM:607292" CDS 198..2483 /gene="SEMA4A" /gene_synonym="FLJ12287" /gene_synonym="RP11-54H19.2" /gene_synonym="SEMB" /codon_start=1 /product="sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A" /protein_id="AAH20974.1" /db_xref="GeneID:64218" /db_xref="HGNC:HGNC:10729" /db_xref="MIM:607292" /translation="MALPALGLDPWSLLGLFLFQLLQLLLPTTTAGGGGQGPMPRVRY YAGDERRALSFFHQKGLQDFDTLLLSGDGNTLYVGAREAILALDIQDPGVPRLKNMIP WPASDRKKSECAFKKKSNETQCFNFIRVLVSYNVTHLYTCGTFAFSPACTFIELQDSY LLPISEDKVMEGKGQSPFDPAHKHTAVLVDGMLYSGTMNNFLGSEPILMRTLGSQPVL KTDNFLRWLHHDASFVAAIPSTQVVYFFFEETASEFDFFERLHTSRVARVCKNDVGGE KLLQKKWTTFLKAQLLCTQPGQLPFNVIRHAVLLPADSPTAPHIYAVFTSQWQVGGTR SSAVCAFSLLDIERVFKGKYKELNKETSRWTTYRGPETNPRPGSCSVGPSSDKALTFM KDHFLMDEQVVGTPLLVKSGVEYTRLAVETAQGLDGHSHLVMYLGTTTGSLHKAVVSG DSSAHLVEEIQLFPDPEPVRNLQLAPTQGAVFVGFSGGVWRVPRANCSVYESCVDCVL ARDPHCAWDPESRTCCLLSAPNLNSWKQDMERGNPEWACASGPMSRSLRPQSRPQIIK EVLAVPNSILELPCPHLSALASYYWSHGPAAVPEASSTVYNGSLLLIVQDGVGGLYQC WATENGFSYPVISYWVDSQDQTLALDPELAGIPREHVKVPLTRVSGGAALAAQQSYWP HFVTVTVLFALVLSGALIILVASPLRALRARGKVQGCETLRPGEKAPLSREQHLQSPK ECRTSASDVDADNNCLGTEVA" BASE COUNT 683 a 1000 c 846 g 728 t ORIGIN 1 ggcatgatgg gcacctggag ggccgcactc ccgttccagc caggctgagc cttctgtccc 61 ctgcctctgg ggcctgggaa ccccccttct tctttctcct gaatggcacc cccgccctag 121 aatccagaca ccgagtttcc cactgtggct ggttcaaggg tatgtgagag ctccctggtg 181 acagtctgtg gctgagcatg gccctcccag ccctgggcct ggacccctgg agcctcctgg 241 gccttttcct cttccaactg cttcagctgc tgctgccgac gacgaccgcg gggggaggcg 301 ggcaggggcc catgcccagg gtcagatact atgcagggga tgaacgtagg gcacttagct 361 tcttccacca gaagggcctc caggattttg acactctgct cctgagtggt gatggaaata 421 ctctctacgt gggggctcga gaagccattc tggccttgga tatccaggat ccaggggtcc 481 ccaggctaaa gaacatgata ccgtggccag ccagtgacag aaaaaagagt gaatgtgcct 541 ttaagaagaa gagcaatgag acacagtgtt tcaacttcat ccgtgtcctg gtttcttaca 601 atgtcaccca tctctacacc tgcggcacct tcgccttcag ccctgcttgt accttcattg 661 aacttcaaga ttcctacctg ttgcccatct cggaggacaa ggtcatggag ggaaaaggcc 721 aaagcccctt tgaccccgct cacaagcata cggctgtctt ggtggatggg atgctctatt 781 ctggtactat gaacaacttc ctgggcagtg agcccatcct gatgcgcaca ctgggatccc 841 agcctgtcct caagaccgac aacttcctcc gctggctgca tcatgacgcc tcctttgtgg 901 cagccatccc ttcgacccag gtcgtctact tcttcttcga ggagacagcc agcgagtttg 961 acttctttga gaggctccac acatcgcggg tggctagagt ctgcaagaat gacgtgggcg 1021 gcgaaaagct gctgcagaag aagtggacca ccttcctgaa ggcccagctg ctctgcaccc 1081 agccggggca gctgcccttc aacgtcatcc gccacgcggt cctgctcccc gccgattctc 1141 ccacagctcc ccacatctac gcagtcttca cctcccagtg gcaggttggc gggaccagga 1201 gctctgcggt ttgtgccttc tctctcttgg acattgaacg tgtctttaag gggaaataca 1261 aagagttgaa caaagaaact tcacgctgga ctacttatag gggccctgag accaaccccc 1321 ggccaggcag ttgctcagtg ggcccctcct ctgataaggc cctgaccttc atgaaggacc 1381 atttcctgat ggatgagcaa gtggtgggga cgcccctgct ggtgaaatct ggcgtggagt 1441 atacacggct tgcagtggag acagcccagg gccttgatgg gcacagccat cttgtcatgt 1501 acctgggaac caccacaggg tcgctccaca aggctgtggt aagtggggac agcagtgctc 1561 atctggtgga agagattcag ctgttccctg accctgaacc tgttcgcaac ctgcagctgg 1621 cccccaccca gggtgcagtg tttgtaggct tctcaggagg tgtctggagg gtgccccgag 1681 ccaactgtag tgtctatgag agctgtgtgg actgtgtcct tgcccgggac ccccactgtg 1741 cctgggaccc tgagtcccga acctgttgcc tcctgtctgc ccccaacctg aactcctgga 1801 agcaggacat ggagcggggg aacccagagt gggcatgtgc cagtggcccc atgagcagga 1861 gccttcggcc tcagagccgc ccgcaaatca ttaaagaagt cctggctgtc cctaactcca 1921 tcctggagct cccctgcccc cacctgtcag ccttggcctc ttattattgg agtcatggcc 1981 cagcagcagt cccagaagcc tcttccactg tctacaatgg ctccctcttg ctgatagtgc 2041 aggatggagt tgggggtctc taccagtgct gggcaactga gaatggcttt tcataccctg 2101 tgatctccta ctgggtggac agccaggacc agaccctggc cctggatcct gaactggcag 2161 gcatcccccg ggagcatgtg aaggtcccgt tgaccagggt cagtggtggg gccgccctgg 2221 ctgcccagca gtcctactgg ccccactttg tcactgtcac tgtcctcttt gccttagtgc 2281 tttcaggagc cctcatcatc ctcgtggcct ccccattgag agcactccgg gctcggggca 2341 aggttcaggg ctgtgagacc ctgcgccctg gggagaaggc cccgttaagc agagagcaac 2401 acctccagtc tcccaaggaa tgcaggacct ctgccagtga tgtggacgct gacaacaact 2461 gcctaggcac tgaggtagct taaactctag gcacaggccg gggctgcggt gcaggcacct 2521 ggccatgctg gctgggcggc ccaagcacag ccctgactag gatgacagca gcacaaaaga 2581 ccacctttct cccctgagag gagcttctgc tactctgcat cactgatgac actcagcagg 2641 gtgatgcaca gcagtctgcc tcccctatgg gactcccttc taccaagcac atgagctctc 2701 taacagggtg ggggctaccc ccagacctgc tcctacactg atattgaaga acctggagag 2761 gatccttcag ttctggccat tccagggacc ctccagaaac acagtgtttc aagagaccct 2821 aaaaaacctg cctgtcccag gaccctatgg taatgaacac caaacatcta aacaatcata 2881 tgctaacatg ccactcctgg aaactccact ctgaagctgc cgctttggac accaacactc 2941 ccttctccca gggtcatgca gggatctgct ccctcctgct tcccttacca gtcgtgcacc 3001 gctgactccc aggaagtctt tcctgaagtc tgaccacctt tcttcttgct tcagttgggg 3061 cagactctga tcccttctgc cctggcagaa tggcaggggt aatctgagcc ttcttcactc 3121 ctttacccta gctgacccct tcacctctcc ccctcccttt tcctttgttt tgggattcag 3181 aaaactgctt gtcagagact gtttattttt tattaaaaat ataaggctta aaaaaaaaaa 3241 aaaaaaaaaa aaaaaaa //