LOCUS BC020947 1701 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens transmembrane protein 55B, mRNA (cDNA clone MGC:26684
IMAGE:4816227), complete cds.
ACCESSION BC020947
VERSION BC020947.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1701)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1701)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: m Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21389334.
FEATURES Location/Qualifiers
source 1..1701
/db_xref="H-InvDB:HIT000039038"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26684 IMAGE:4816227"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1701
/gene="TMEM55B"
/gene_synonym="DKFZp434M0519"
/gene_synonym="MGC26684"
/db_xref="GeneID:90809"
/db_xref="HGNC:HGNC:19299"
/db_xref="MIM:609865"
CDS 153..986
/gene="TMEM55B"
/gene_synonym="DKFZp434M0519"
/gene_synonym="MGC26684"
/codon_start=1
/product="transmembrane protein 55B"
/protein_id="AAH20947.1"
/db_xref="GeneID:90809"
/db_xref="HGNC:HGNC:19299"
/db_xref="MIM:609865"
/translation="MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPP
YGAAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVV
KCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGP
LSPEPQPMGVRVICGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYTRKRCICCFLL
GLLLAVTATGLAFGTWKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNF
S"
BASE COUNT 330 a 470 c 504 g 397 t
ORIGIN
1 actggttgcg gagtgagctg ggcgcgcggc gcgcaggcgc cctggggacc cggtagcggc
61 ggtggcggtg gcggcggtgg cggtggctgc ggcgacggca gaggcgaagg gagccggatc
121 gccgacctga gcgggaggcg gcggtggcgg ccatggcggc agatggagag cgttccccgc
181 tgctgtctga gcccatcgac ggtggcgcgg gcggcaacgg tttagtgggg cccggcggga
241 gtggggctgg gcccggggga ggcctgaccc cctccgcacc accgtacgga gccgcatttc
301 ccccgtttcc cgaggggcat ccagccgtgt tgcctgggga ggacccaccc ccctattcac
361 ccttaactag cccggacagt gggagtgccc ctatgatcac ctgccgagtc tgccaatctc
421 tcatcaacgt ggaaggcaag atgcatcagc atgtagtcaa atgtggtgtc tgcaatgaag
481 ccaccccaat caagaatgca cccccaggga aaaaatatgt tcgatgcccc tgtaactgtc
541 tccttatctg caaagtgaca tcccaacgga ttgcatgccc tcggccctac tgcaaaagaa
601 tcatcaacct ggggcctgtg catcccggac ctctgagtcc agaaccccaa cccatgggtg
661 tcagggttat ctgtggacat tgcaagaata cttttctgtg gacagagttc acagaccgca
721 ctttggcacg ttgtcctcac tgcaggaaag tgtcatctat tgggcgcaga tacacacgta
781 agagatgtat ctgctgcttc ttgcttggct tgcttttggc agtcactgcc actggccttg
841 cctttggcac atggaagcat gcacggcgat atggaggcat ctatgcagcc tgggcatttg
901 tcatcctgtt ggctgtgctg tgtttgggcc gggctcttta ttgggcctgt atgaaggtca
961 gccaccctgt ccagaacttc tcctgagcct gatgacccac agactgtgcc tggcccctcc
1021 ctggtgggga cagtgacact acgaagggag ctggggtagt taaaggctcc cggggcttct
1081 agaaggaagc caagcagctg ccttcctttt ccctggggag aggtaggaag gaaccaggcc
1141 ctcacttagg tttggagggg cagataagag cactgctgac catctgcttt cctccaaggg
1201 ttctgtgtct agggtgaagt aggcaaaacg ttgcccttaa aactgggccc tgaagacggt
1261 tccagccttg tccttcctgt gtgctccctg agagccattc ctgtccctta cacattccag
1321 ggcagggtgg gggtgggtag ccctgggggt tcccctccct cttgtgcacc attaggactt
1381 tgctgctgct attgcacttc accagaggtt ggctctggcc tcagtaccct cagtctcctc
1441 tccccacatt gtgtcctgtg ggggtggggt cagccgctgc tctgtacaga accacaggaa
1501 ctgatgtgta tataactatt taatgtggga tatgttcccc tattcctgta tttcccttaa
1561 ttcctcctcc cgaccttttt taccccccca gttgcagtat ttaactgggc tgggtagggt
1621 tgctcagtct ttgggggagg ttagggactt atcctgtgct tgtaaataaa taaggtcatg
1681 actctaaaaa aaaaaaaaaa a
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