LOCUS BC020843 1012 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens hepatitis A virus cellular receptor 2, mRNA (cDNA
clone IMAGE:4701288), complete cds.
ACCESSION BC020843
VERSION BC020843.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1012)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1012)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: a Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21314757
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1012
/db_xref="H-InvDB:HIT000038999"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4701288"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1012
/gene="HAVCR2"
/gene_synonym="FLJ14428"
/gene_synonym="KIM-3"
/gene_synonym="Tim-3"
/gene_synonym="TIM3"
/gene_synonym="TIMD3"
/db_xref="GeneID:84868"
/db_xref="MIM:606652"
CDS 110..538
/gene="HAVCR2"
/gene_synonym="FLJ14428"
/gene_synonym="KIM-3"
/gene_synonym="Tim-3"
/gene_synonym="TIM3"
/gene_synonym="TIMD3"
/codon_start=1
/product="HAVCR2 protein"
/protein_id="AAH20843.1"
/db_xref="GeneID:84868"
/db_xref="MIM:606652"
/translation="MFSHLPFDCVLLLLLLLLTRSSEVEYRAEVGQNAYLPCFYTPAA
PGNLVPVCWGKGACPVFECGNVVLRTDERDVNYWTSRYWLNGDFRKGDVSLTIENVTL
ADSGIYCCRIQIPGIMNDEKFNLKLVIKPGEWTFACHLYE"
misc_feature 182..487
/gene="HAVCR2"
/gene_synonym="FLJ14428"
/gene_synonym="KIM-3"
/gene_synonym="Tim-3"
/gene_synonym="TIM3"
/gene_synonym="TIMD3"
/note="IG; Region: Immunoglobulin"
/db_xref="CDD:smart00409"
BASE COUNT 275 a 226 c 254 g 257 t
ORIGIN
1 actgctcatg tgattgtgga gtagacagtt ggaagaagta cccagtccat ttggagagtt
61 aaaactgtgc ctaacagagg tgtcctctga cttttcttct gcaagctcca tgttttcaca
121 tcttcccttt gactgtgtcc tgctgctgct gctgctacta cttacaaggt cctcagaagt
181 ggaatacaga gcggaggtcg gtcagaatgc ctatctgccc tgcttctaca ccccagccgc
241 cccagggaac ctcgtgcccg tctgctgggg caaaggagcc tgtcctgtgt ttgaatgtgg
301 caacgtggtg ctcaggactg atgaaaggga tgtgaattat tggacatcca gatactggct
361 aaatggggat ttccgcaaag gagatgtgtc cctgaccata gagaatgtga ctctagcaga
421 cagtgggatc tactgctgcc ggatccaaat cccaggcata atgaatgatg aaaaatttaa
481 cctgaagttg gtcatcaaac caggtgagtg gacatttgca tgccatcttt atgaataaga
541 tttatctgtg gatcatatta aaggtactga ttgttctcat ctctgacttc cctaattata
601 gccctggagg agggccacta agacctaaag tttaacaggc cccattggtg atgctcagtg
661 atatttaaca ccttctctct gttttaaaac tcatgggtgt gcctgggcgt ggtggctcgc
721 gcctctggtc ccagcacttt gggaggctga ggccggtgga tcatgaggtc aggaattcga
781 gaccagcctg gccaacatgg taaaaccttg tctccactaa aaatacaaaa aattagccag
841 gcatggttac gggagcctgt aattctagct acttgggggg ctgaagcagg agaatcactt
901 gaacctggaa gtcggaggtt gcggtaagcc aagatctcgc cattgtactc cagcctggct
961 gacaagagtg aaactctgtc ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//