LOCUS BC020766 705 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens C-reactive protein, pentraxin-related, mRNA (cDNA
clone IMAGE:4766715), complete cds.
ACCESSION BC020766
VERSION BC020766.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 705)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 705)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: k Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 10835134
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..705
/db_xref="H-InvDB:HIT000038948"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4766715"
/tissue_type="Liver"
/clone_lib="NIH_MGC_76"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..705
/gene="CRP"
/gene_synonym="PTX1"
/db_xref="GeneID:1401"
/db_xref="MIM:123260"
CDS 105..380
/gene="CRP"
/gene_synonym="PTX1"
/codon_start=1
/product="CRP protein"
/protein_id="AAH20766.1"
/db_xref="GeneID:1401"
/db_xref="MIM:123260"
/translation="MEKLLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPL
TKPLKAFTVCLHFYTELSSTRGPNVLNWRALKYEVQGEVFTKPQLWP"
misc_feature 159..290
/gene="CRP"
/gene_synonym="PTX1"
/note="PTX; Region: Pentraxin / C-reactive protein /
pentaxin family"
/db_xref="CDD:smart00159"
misc_feature 303..377
/gene="CRP"
/gene_synonym="PTX1"
/note="PTX; Region: Pentraxin / C-reactive protein /
pentaxin family"
/db_xref="CDD:smart00159"
BASE COUNT 193 a 175 c 174 g 163 t
ORIGIN
1 aaggcaagag atctaggact tctagcccct gaactttcag ccgaatacat cttttccaaa
61 ggagtgaatt caggcccctg tatcactggc agcaggacgt gaccatggag aagctgttgt
121 gtttcttggt cttgaccagc ctctctcatg cttttggcca gacagacatg tcgaggaagg
181 cttttgtgtt tcccaaagag tcggatactt cctatgtatc cctcaaagca ccgttaacga
241 agcctctcaa agccttcact gtgtgcctcc acttctacac ggaactgtcc tcgacccgtg
301 gtcctaatgt cctgaactgg cgggcactga agtatgaagt gcaaggcgaa gtgttcacca
361 aaccccagct gtggccctga ggcccagctg tgggtcctga agtcttccca aggattgagt
421 tatggacttt gggagtgaga catcttcttg ctgctggatt tccaagctga gaggacgtga
481 acctgggacc accagtagcc atcttgtttg ccacatggag agagactgtg aggacagaag
541 ccaaactgga agtggaggag ccaagggatt gacaaacaac agagccttga ccacgtggag
601 tctctgaatc agccttgtct ggaaccagat ctacacctgg actgcccagg tctataagcc
661 aataaagccc ctgtttacta gaaaaaaaaa aaaaaaaaaa aaaaa
//