LOCUS BC020731 1027 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ficolin (collagen/fibrinogen domain containing) 3
(Hakata antigen), mRNA (cDNA clone MGC:22543 IMAGE:4692272),
complete cds.
ACCESSION BC020731
VERSION BC020731.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1027)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1027)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: m Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27754777.
FEATURES Location/Qualifiers
source 1..1027
/db_xref="H-InvDB:HIT000038922"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22543 IMAGE:4692272"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1027
/gene="FCN3"
/gene_synonym="FCNH"
/gene_synonym="HAKA1"
/gene_synonym="MGC22543"
/db_xref="GeneID:8547"
/db_xref="HGNC:HGNC:3625"
/db_xref="MIM:604973"
CDS 7..873
/gene="FCN3"
/gene_synonym="FCNH"
/gene_synonym="HAKA1"
/gene_synonym="MGC22543"
/codon_start=1
/product="ficolin (collagen/fibrinogen domain containing)
3 (Hakata antigen)"
/protein_id="AAH20731.1"
/db_xref="GeneID:8547"
/db_xref="HGNC:HGNC:3625"
/db_xref="MIM:604973"
/translation="MDLLWILPSLWLLLLGGPACLKTQEHPSCPGPRELEASKVVLLP
SCPGAPGSPGEKGAPGPQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSGWYHLCLPE
GRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQL
TLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGR
PFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGV
GHPYRRVRMMLR"
BASE COUNT 227 a 296 c 284 g 220 t
ORIGIN
1 agcaagatgg atctactgtg gatcctgccc tccctgtggc ttctcctgct tggggggcct
61 gcctgcctga agacccagga acaccccagc tgcccaggac ccagggaact ggaagccagc
121 aaagttgtcc tcctgcccag ttgtcccgga gctccaggaa gtcctgggga gaagggagcc
181 ccaggtcctc aagggccacc tggaccacca ggcaagatgg gccccaaggg tgagccaggc
241 cccagaaact gccgggagct gttgagccag ggcgccacct tgagcggctg gtaccatctg
301 tgcctacctg agggcagggc cctcccagtc ttttgtgaca tggacaccga ggggggcggc
361 tggctggtgt ttcagaggcg ccaggatggt tctgtggatt tcttccgctc ttggtcctcc
421 tacagagcag gttttgggaa ccaagagtct gaattctggc tgggaaatga gaatttgcac
481 cagcttactc tccagggtaa ctgggagctg cgggtagagc tggaagactt taatggtaac
541 cgtactttcg cccactatgc gaccttccgc ctcctcggtg aggtagacca ctaccagctg
601 gcactgggca agttctcaga gggcactgca ggggattccc tgagcctcca cagtgggagg
661 ccctttacca cctatgacgc tgaccacgat tcaagcaaca gcaactgtgc agtgattgtc
721 cacggtgcct ggtggtatgc atcctgttac cgatcaaatc tcaatggtcg ctatgcagtg
781 tctgaggctg ccgcccacaa atatggcatt gactgggcct caggccgtgg tgtgggccac
841 ccctaccgca gggttcggat gatgcttcga tagggcactc tggcagccag tgcccttatc
901 tctcctgtac agcttccgga tcgtcagcca ccttgccttt gccaaccacc tctgcttgcc
961 tgtccacatt taaaaataaa atcattttag ccctttccaa aaaaaaaaaa aaaaaaaaaa
1021 aaaaaaa
//