LOCUS BC020686 1300 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens neural precursor cell expressed, developmentally
down-regulated 9, mRNA (cDNA clone IMAGE:4717875), complete cds.
ACCESSION BC020686
VERSION BC020686.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1300)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1300)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: e Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33667052
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1300
/db_xref="H-InvDB:HIT000090209"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4717875"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1300
/gene="NEDD9"
/gene_synonym="CAS-L"
/gene_synonym="CASL"
/gene_synonym="dJ49G10.2"
/gene_synonym="dJ761I2.1"
/gene_synonym="HEF1"
/db_xref="GeneID:4739"
/db_xref="HGNC:HGNC:7733"
/db_xref="MIM:602265"
CDS 139..663
/gene="NEDD9"
/gene_synonym="CAS-L"
/gene_synonym="CASL"
/gene_synonym="dJ49G10.2"
/gene_synonym="dJ761I2.1"
/gene_synonym="HEF1"
/codon_start=1
/product="neural precursor cell expressed, developmentally
down-regulated 9"
/protein_id="AAH20686.1"
/db_xref="GeneID:4739"
/db_xref="HGNC:HGNC:7733"
/db_xref="MIM:602265"
/translation="MKYKNLMARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWW
LCSLHGRQGIVPGNRVKLLIGPMQETASSHEQPASGLMQQTFGQQKLYQVPNPQAAPR
DTIYQVPPSYQNQGIYQVPTGHGTQEQEVYQVPPSVQRSIGGTSGPHVGKKVFQRDGQ
VSYFLVRASKQTSL"
BASE COUNT 368 a 307 c 284 g 341 t
ORIGIN
1 gcgctgcgac tgacaagcgg ctctgcccgg gaccttctcg ctttcatcta gcgctgcact
61 caatggaggg gcgggcaccg cagtgcttaa tgctgtctta actagtgtag gaaaacggct
121 caacccaccg ctgccgaaat gaagtataag aatcttatgg caagggcctt atatgacaat
181 gtcccagagt gtgccgagga actggccttt cgcaagggag acatcctgac cgtcatagag
241 cagaacacag ggggactgga aggatggtgg ctgtgctcgt tacacggtcg gcaaggcatt
301 gtcccaggca accgggtgaa gcttctgatt ggtcccatgc aggagactgc ctccagtcac
361 gagcagcctg cctctggact gatgcagcag acctttggcc aacagaagct ctatcaagtg
421 ccaaacccac aggctgctcc ccgagacacc atctaccaag tgccaccttc ctaccaaaat
481 cagggaattt accaagtccc cactggccac ggcacccaag aacaagaggt atatcaggtg
541 ccaccatcag tgcagagaag cattggggga accagtgggc cccacgtggg taaaaaggtg
601 ttccagagag atgggcaagt gtcctatttc ttagtgagag cctctaaaca aaccagcttg
661 tgaacctcca ctgaaaagat ctcatctgat gagcatttta ataaagtgtc ctgagtttgg
721 aggcttgccg tctttctctt ggataaatat cttcatctcc tagacttgga aaaacacatt
781 ttctcctggg gtttcccatt ggcgtgtctt gagctgctct ggtgataacc gtaataatgc
841 caatactgat acgaacagca gaaaacagta accccaagaa ctctacagat gatcatcaag
901 gaccactgtc tcttaccatt tgctgctttg gtttgaaatt ctcactgcct cgtagatctc
961 attttgagca ctatacattc ctaaagattg atttctttct atctgactta aatttaggaa
1021 tgattaaatc ttcatttctc ccatgatttg atcctaaaac attttgaaag gaaacagcct
1081 tgagatctgt gattactaag acatacataa cattcttatc acattagaaa gcaagaattg
1141 actgttgctt gtcttgttcc tgttgtcttg tcccctgaat tcctgtttat ctttgattgt
1201 atgtgggaca ttgtattttc agtacatttg tagaaataat gtgaagccta taaagatgtt
1261 ctctgcctcc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//