LOCUS BC020656 1373 bp mRNA linear HUM 30-DEC-2006
DEFINITION Homo sapiens serine palmitoyltransferase, long chain base subunit
3, mRNA (cDNA clone IMAGE:4770239), complete cds.
ACCESSION BC020656
VERSION BC020656.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1373)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1373)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: m Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922874
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1373
/db_xref="H-InvDB:HIT000038876"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4770239"
/tissue_type="Placenta"
/clone_lib="NIH_MGC_79"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1373
/gene="SPTLC3"
/gene_synonym="1"
/gene_synonym="dJ718P11"
/gene_synonym="dJ718P11.1"
/db_xref="GeneID:55304"
/db_xref="HGNC:HGNC:16253"
CDS 6..533
/gene="SPTLC3"
/gene_synonym="1"
/gene_synonym="dJ718P11"
/gene_synonym="dJ718P11.1"
/codon_start=1
/product="SPTLC3 protein"
/protein_id="AAH20656.1"
/db_xref="GeneID:55304"
/db_xref="HGNC:HGNC:16253"
/translation="MANPGGGAVCNGKLHNHKKQSNGSQSRNCTKNGIVKEAQQNGKP
HFYDKLIVESFEEAPLHVMVFTYMGYGIGTLFGYLRDFLRNWGIEKCNAAVERKEQKV
RMRTSLDLCQCLLLSKVFSEVVMQVQILESMRCSGTIQGKFHSSPPAKPHYPWAYGPV
FTNISWATTICHIPN"
BASE COUNT 477 a 290 c 275 g 331 t
ORIGIN
1 cacccatggc taaccctgga ggtggtgctg tttgcaacgg gaaacttcac aatcacaaga
61 aacagagcaa tggctcacaa agcagaaact gcacaaagaa tggaatagtg aaggaagccc
121 agcaaaatgg gaagccacat ttttatgata agctcattgt tgaatcgttt gaggaagcac
181 cccttcatgt tatggttttc acttacatgg gatatggaat tggaaccctg tttggctatc
241 tcagagactt tttaagaaac tggggaatag aaaaatgcaa cgcagctgtg gaacgaaaag
301 aacaaaaagt acgtatgcgc acctccctgg atctttgtca atgcctactc ctctctaaag
361 tgttctcaga agtggtgatg caggtgcaga ttctagaaag catgaggtgc tcaggaacta
421 ttcagggcaa atttcattca tctccacctg ctaaacccca ttacccatgg gcttatggac
481 ctgtttttac aaacatctca tgggcaacta ctatttgcca cataccaaac taaggctttt
541 cccatacctt gtaatattta atttttgtaa caaccccatg atatagatat taaactataa
601 ttttgaagat aaaaacatca aaatataaaa gcaagtgctc ctgggtggga gtgtactttg
661 gtcttctagt tgtaagttgg gtattattta tgctctatcc tgaaaaggaa agtgcatttg
721 agtgaactgg gactttttta tttcatctaa atctgatttc tcacctttga cactattaat
781 attttgaacc aattttttgg gcattgtaag aattttaaca gcatctgaaa aatatagcat
841 taaaccacta aagctaagga ccctgatgaa gtcactgcac cctccactac ctctactgga
901 acaggcactg gtatccactg ctgagagacc catagacggt tcacatcaca ggactctgtg
961 gagacaatcc ccagtaccaa cttggagccg ggtagactcg gtgggtggcg agacccagaa
1021 gagagacaac aatcactgca gttcagctca caggaagcca catccatagg aaaaggggga
1081 gagtaataca tcaagggaac accccaaggg acaaaagaat ctgaacaaca gtcttcagcc
1141 ctagactttc ccaaatgaga aggaaccaga aaaccaacct tggtaatatg acaaaacaag
1201 gctcttcaac accccccaaa atataatact agttcaccgg caatggatcc aaaccaagaa
1261 gaaatccctg atttacctga aaaagaattc aggaggttat taagctaatc agggagaggc
1321 cagagaaagg caaagcccaa tgcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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