LOCUS BC020548 2960 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens transforming growth factor, beta receptor associated
protein 1, mRNA (cDNA clone MGC:21319 IMAGE:4420120), complete cds.
ACCESSION BC020548
VERSION BC020548.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2960)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2960)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC020548.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 27 Row: j Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222146.
FEATURES Location/Qualifiers
source 1..2960
/db_xref="H-InvDB:HIT000038814"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21319 IMAGE:4420120"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2960
/gene="TGFBRAP1"
/gene_synonym="TRAP-1"
/gene_synonym="TRAP1"
/db_xref="GeneID:9392"
/db_xref="HGNC:HGNC:16836"
/db_xref="MIM:606237"
CDS 66..2648
/gene="TGFBRAP1"
/gene_synonym="TRAP-1"
/gene_synonym="TRAP1"
/codon_start=1
/product="transforming growth factor, beta receptor
associated protein 1"
/protein_id="AAH20548.1"
/db_xref="GeneID:9392"
/db_xref="HGNC:HGNC:16836"
/db_xref="MIM:606237"
/translation="MMSIKAFTLVSAVERELLMGDKERVNIECVECCGRDLYVGTNDC
FVYHFLLEERPVPAGPATFTATKQLQRHLGFKKPVNELRAASALNRLLVLCDNSISLV
NMLNLEPVPSGARIKGAATFALNENPVSGDPFCVEVCIISVKRRTIQMFLVYEDRVQI
VKEVSTAEQPLAVAVDGHFLCLALTTQYIIHNYSTGVSQDLFPYCSEERPPIVKRIGR
QEFLLAGPGGLGMFATVAGISQRAPVHWSENVIGAAVSFPYVIALDDEFITVHSMLDQ
QQKQTLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDLLASRRVEEALVLAK
GARRNIPKEKFQVMYRRILQQAGFIQFAQLQFLEAKELFRSGQLDVRELISLYPFLLP
TSSSFTRSHPPLHEYADLNQLTQGDQEKMAKCKRFLMSYLNEVRSTEVANGYKEDIDT
ALLKLYAEADHDSLLDLLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNNQDAAAVQL
WVNIVNGDVQDSTRSDLYEYIVDFLTYCLDEELVWAYADWVLQKSEEVGVQVFTKRPL
DEQQKNSFNPDDIINCLKKYPKALVKYLEHLVIDKRLQKEEYHTHLAVLYLEEVLLQR
ASASGKGAEATETQAKLRRLLQKSDLYRVHFLLERLQGAGLPMESAILHGKLGEHEKA
LHILVHELQDFAAAEDYCLWCSEGRDPPHRQQLFHTLLAIYLHAGPTAHELAVAAVDL
LNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHARRTMQVALGLARSENLIY
TYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNGGLVHTHCAASRHTNPSSSSP
GTRT"
BASE COUNT 728 a 808 c 813 g 611 t
ORIGIN
1 cggggcccca ggccgcgggg cggcgcggga cggcgggcgc cggcgccgca gatcagccag
61 tagacatgat gagcatcaaa gcctttacgc ttgtctctgc tgtggagcgg gagctgctga
121 tgggcgacaa ggagcgcgtc aacatagagt gcgtggagtg ctgcggcagg gacctctacg
181 tgggcaccaa cgactgcttc gtctaccact tcctgttgga ggagaggcca gtgcctgctg
241 ggccagccac gttcactgcc accaaacagc tgcagagaca cttgggcttc aagaagcccg
301 tgaacgagct gcgcgcggcc tcagcactca acaggctgct ggtgctgtgt gacaactcca
361 tcagcctggt caacatgctg aacctcgagc cagtgccttc gggggcccgc atcaaggggg
421 cagccacgtt tgcactgaac gagaaccctg tgagtgggga ccccttctgt gtagaagttt
481 gcatcatctc tgtcaaacgc agaaccatcc agatgtttct ggtgtacgag gaccgggtgc
541 agatcgtcaa ggaggtgtcg actgccgagc agcccctcgc tgtggctgtg gacggccact
601 tcctgtgtct ggctctgacc actcagtaca tcatccacaa ttacagcaca ggcgtctccc
661 aggacctttt tccctactgc agtgaggaga ggccgccgat cgtcaagagg atagggagac
721 aggagttcct gctggcgggc cccggagggc tgggcatgtt tgccacagtc gcagggatat
781 cccagcgtgc ccccgtgcac tggtcggaga atgtgattgg ggcggctgtg tcctttccat
841 acgtcatagc gctcgatgac gaattcatca cagtccacag catgttggat cagcaacaga
901 agcagacgct gccctttaag gagggccata tcctacagga ctttgaagga agagtgatcg
961 ttgccacaag taaaggagtt tacatcttgg ttccattacc tttggaaaaa caaatacagg
1021 atcttctagc aagccgcaga gtagaagagg ctttggtttt agcaaaagga gcccggagga
1081 acattccaaa ggaaaaattt caggtaatgt acagaaggat tctgcagcag gcgggattta
1141 tacagtttgc acaacttcag ttcctggaag ctaaagagct cttcagaagc ggccagcttg
1201 atgtccggga gctgatctct ctctacccct tcctgttgcc cacctcctcc tccttcaccc
1261 ggtcccaccc tcctcttcat gagtacgcag acctgaacca gctgacccag ggggaccagg
1321 agaagatggc caagtgcaaa cgcttcctca tgagctacct gaacgaggtc cgcagcacag
1381 aggtagcaaa tggctacaag gaggacatcg acacagcctt gctcaaactg tatgcagagg
1441 ctgaccacga cagcctgctg gacctcctgg tcactgagaa cttctgtctt ctgacggaca
1501 gtgctgcctg gctagagaag cacaaaaagt attttgcact tggactgctc tatcattata
1561 ataaccaaga tgctgctgca gttcagttgt gggtgaacat tgtgaatggc gatgtccagg
1621 actccacacg ctcagacctg tatgaataca tcgtggattt tcttacctac tgcttagacg
1681 aggaactagt gtgggcctat gctgattggg tcctgcagaa aagtgaagag gtcggagttc
1741 aggttttcac caagagacct ttggatgaac agcagaagaa cagttttaat ccagacgaca
1801 ttatcaattg ccttaaaaaa taccctaaag cccttgtgaa gtatctggaa catcttgtga
1861 tagacaagag actgcagaaa gaagagtatc acacccactt agctgtgctg tacctggaag
1921 aggtgctgct gcagagggcc tccgccagtg gcaagggtgc agaggccacc gagacgcagg
1981 ccaagctgcg gcggctgctc cagaaatctg atttataccg agtccacttt cttctcgaga
2041 ggctgcaggg agctggcctg cccatggaga gcgccatcct gcacgggaag ctgggcgagc
2101 atgagaaggc gctgcatatc ctggtgcacg agctgcagga ctttgcagcg gccgaggact
2161 actgcctgtg gtgctccgag ggccgagacc caccccaccg ccagcaactc tttcacacgc
2221 tgctggccat ctacctgcat gctggcccca ctgcccacga gctggccgtg gctgccgtgg
2281 acctgctgaa ccgccacgcc accgaatttg atgcagccca ggtgctgcag atgctgcctg
2341 acacctggtc agtgcagctc ctctgcccat tcctgatggg ggccatgagg gacagcatcc
2401 atgccaggag gaccatgcag gtggctctcg gcctggccag gtccgaaaac ttaatctaca
2461 cctacgataa gatgaagttg aaaggaagct caatccaact ctcagacaaa aagctttgtc
2521 agatatgcca aaatcccttt tgtgagcctg tgtttgttag atacccaaat ggtggtcttg
2581 tgcacaccca ctgtgccgcc agcagacaca caaaccccag ctcatccagt cctggcactc
2641 ggacttgaaa agcttggccc aagggtgcga ggggaactcc gagttctttc tgagcctgct
2701 ggacatgaag agcagatgac caccatgctc tgtgtcagcc aggacgaagg gagacatctg
2761 ggtgccaggg agccttccgt ccatacgcaa caaggactcc tcgctgctga ccaggctcta
2821 tgaatgtaca tggaatgacc aggctctatg aatgtacatg gaaaacccct aaaaatcccc
2881 aaaacagaaa catacaagag ttcacctgtc caggtacata gtaatccaag acagaggtct
2941 actttgaaaa aaaaaaaaaa
//