LOCUS BC020210 2135 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens EF-hand domain (C-terminal) containing 1, mRNA (cDNA
clone MGC:31844 IMAGE:4586338), complete cds.
ACCESSION BC020210
VERSION BC020210.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2135)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2135)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: f Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922435.
FEATURES Location/Qualifiers
source 1..2135
/db_xref="H-InvDB:HIT000038752"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31844 IMAGE:4586338"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2135
/gene="EFHC1"
/gene_synonym="dJ304B14.2"
/gene_synonym="EJM1"
/gene_synonym="FLJ10466"
/db_xref="GeneID:114327"
/db_xref="HGNC:HGNC:16406"
/db_xref="MIM:608815"
CDS 92..2014
/gene="EFHC1"
/gene_synonym="dJ304B14.2"
/gene_synonym="EJM1"
/gene_synonym="FLJ10466"
/codon_start=1
/product="EF-hand domain (C-terminal) containing 1"
/protein_id="AAH20210.1"
/db_xref="GeneID:114327"
/db_xref="HGNC:HGNC:16406"
/db_xref="MIM:608815"
/translation="MVSNPVHGLPFLPGTSFKDSTKTAFHRSQTLSYRNGYAIVRRPT
VGIGGDRLQFNQLSQAELDELASKAPVLTYGQPKQAPPADFIPAHVAFDKKVLKFDAY
FQEDVPMSTEEQYRIRQVNIYYYLEDDSMSVIEPVVENSGILQGKLIKRQRLAKNDRG
DHYHWKDLNRGINITIYGKTFRVVDCDQFTQVFLESQGIELNPPEKMALDPYTELRKQ
PLRKYVTPSDFDQLKQFLTFDKQVLRFYAIWDDTDSMYGECRTYIIHYYLMDDTVEIR
EVHERNDGIDPFPLLMNRQRVPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKS
LTILGRTFFIYDCDPFTRRYYKEKFGITDLPRIDVSKREPPPVKQELPPYNGFGLVED
SAQNCFALIPKAPKKDVIKMLVNDNKVLRYLAVLESPIPEDKDRRFVFSYFLATDMIS
IFEPPVRNSGIIGGKYLGRTKVVKPYSTVDNPVYYGPSDFFIGAVIEVFGHRFIILDT
DEYVLKYMESNAAQYSPEALASIQNHVRKREAPAPEAESKQTEKDPGVQELEALIDTI
QKQLKDHSCKDNIREAFQIYDKEASGYVDRDMFFKICESLNVPVDDSLVKELLRMCSH
GEGKINYYNFVRAFSN"
BASE COUNT 648 a 466 c 473 g 548 t
ORIGIN
1 gatcctggag gtgcccgcga acactgcttg tcgcctgggc aaccggagag gacgaagcag
61 gacctaggtg gcggcggtgg taccggctgc aatggtgtcc aatcccgtgc atggcttgcc
121 ctttcttccg ggcacgtcct ttaaggactc tacgaaaaca gccttccaca gaagtcagac
181 gctgagctac aggaacggct atgcaattgt tcgacgtcca acagttggga taggcggaga
241 ccggctccag ttcaaccagc tgtcccaggc tgagctggat gagttggcca gtaaggcacc
301 agtcttaact tatggccaac ctaaacaagc cccacctgcg gattttattc ctgcgcatgt
361 ggcctttgac aaaaaggtac tgaaatttga tgcctatttc caagaagatg ttcctatgtc
421 aactgaggaa cagtatagga tccgtcaggt gaacatttac tattatctag aagatgacag
481 catgtctgtc atagagcctg ttgtagaaaa ttctggaatc cttcaaggca agttaataaa
541 acgccagcgg ctagccaaga atgaccgggg tgaccattac cattggaaag acctaaatcg
601 aggaataaac atcacaattt atggcaaaac tttccgcgtt gttgactgtg accaattcac
661 acaggtattt ttagaaagcc aaggaattga gttaaatcca ccagagaaga tggctcttga
721 tccttacact gaactccgaa aacagcctct tcgtaagtat gtcaccccat cagactttga
781 tcaactcaag caatttctca cctttgacaa acaggtcctt cgattctatg caatctggga
841 tgatacagac agcatgtatg gtgaatgtcg gacctacatc attcattact atcttatgga
901 tgatacggtg gaaattcgag aggtccacga acggaatgat gggatagatc ctttcccact
961 cctaatgaac cgccagcgtg tgcccaaagt tttggtggaa aatgcaaaga acttccctca
1021 gtgtgtgcta gaaatctctg accaagaagt gttggaatgg tatactgcta aagacttcat
1081 tgttgggaag tcactcacta tccttgggag aactttcttc atttatgatt gtgatccatt
1141 tactcgacgg tattacaaag agaagtttgg aatcactgat ttaccacgta ttgatgtgag
1201 caagcgggaa ccacctccag taaaacagga gttgcctcct tataacggtt ttggactagt
1261 ggaagattct gctcagaatt gttttgctct cattccaaaa gctccaaaaa aagacgttat
1321 taaaatgctg gtgaatgata acaaggtgct tcgttatttg gctgtactgg aatcccccat
1381 cccagaagac aaagaccgca gatttgtctt ctcttacttt ctagctaccg acatgatcag
1441 tatctttgag cctcctgttc gcaattctgg tatcattggg ggcaagtacc ttggcaggac
1501 taaagttgtt aaaccatact ctacagtgga caaccctgtc tactatggcc ccagtgactt
1561 cttcattggt gctgtgattg aagtgtttgg tcaccggttc atcatccttg atacagacga
1621 gtatgttttg aaatacatgg agagcaacgc tgcccagtat tcaccagaag cactcgcgtc
1681 aattcagaac catgtccgaa agcgagaagc gcctgctcca gaagcagaaa gcaagcaaac
1741 tgaaaaggat ccaggcgtgc aggaattgga agcattaata gacacaattc agaagcaact
1801 gaaagatcac tcatgcaaag acaacattcg tgaggcattt caaatttatg acaaggaagc
1861 ttcaggatat gtggacagag acatgttctt taaaatctgt gaatcgctta acgtcccagt
1921 ggatgactcc ttggttaagg agttactcag gatgtgctct catggagaag gcaaaattaa
1981 ctactataac tttgttcgtg ctttctcaaa ctgacctgct gatgagaaaa tgcaagacaa
2041 tttttgatac tggaactatg ctttgaaata caccttacac tcttcataga ggcaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
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