LOCUS BC020194 2305 bp mRNA linear HUM 24-FEB-2004
DEFINITION Homo sapiens chromosome 9 open reading frame 3, mRNA (cDNA clone
MGC:31762 IMAGE:5020674), complete cds.
ACCESSION BC020194
VERSION BC020194.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2305)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2305)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 40 Row: p Column: 19.
FEATURES Location/Qualifiers
source 1..2305
/db_xref="H-InvDB:HIT000038742"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:31762 IMAGE:5020674"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2305
/gene="C9orf3"
/gene_synonym="C90RF3"
/gene_synonym="FLJ14675"
/db_xref="GeneID:84909"
CDS 217..1806
/gene="C9orf3"
/gene_synonym="C90RF3"
/gene_synonym="FLJ14675"
/codon_start=1
/product="C9orf3 protein"
/protein_id="AAH20194.1"
/db_xref="GeneID:84909"
/translation="MSTWQATVRAAASFVVLMSGENSAKPTQLWEECSSWYYYVTMPM
PASTFTIAVGCWTEMKMETWSSNDLATERPFSPSEANFRHVGVCSHMEYPCRFQNASA
TTQEIIPHRVFAPVCLTGACQETLLRLIPPCLSAAHSVLGAHPFSRLDVLIVPANFPS
LGMASPHIMFLSQSILTGGNHLCGTRLCHEIAHAWFGLAIGARDWTEEWLSEGFATHL
EDVFWATAQQLAPYEAREQQELRACLRWRRLQDEMQCSPEEMQVLRPSKDKTGHTSDS
GASVIKHGLNPEKIFMQVHYLKGYFLLRFLAKRLGDETYFSFLRKFVHTFHGQLILSQ
DFLQMLLENIPEEKRLELSVENIYQDWLESSGIPKPLQRERRAGAECGLARQVRAEVT
KWIGVNRRPRKRKRREKEEVFEKLLPDQLVLLLEHLLEQKTLSPRTLQSLQRTYHLQD
QDAEVRHRWCELIVKHKFTKAYKSVERFLQEDQAMGVYLYGELMVSEDARQQQLARRC
FERTKEQMDRSSAQVVAEMLF"
misc_feature 220..1020
/gene="C9orf3"
/gene_synonym="C90RF3"
/gene_synonym="FLJ14675"
/note="Peptidase_M1; Region: Peptidase family M1. Members
of this family are aminopeptidases. The members differ
widely in specificity, hydrolysing acidic, basic or
neutral N-terminal residues. This family includes
leukotriene-A4 hydrolase, this enzyme also has an
aminopeptidase activity"
/db_xref="CDD:pfam01433"
BASE COUNT 580 a 578 c 605 g 542 t
ORIGIN
1 ctctttgaca ctgacacttg gagcttgcag ataaggaaga caggggctca gacagctact
61 gactttcctc atgctatcag gatatggtac aaaactaaac ctgaagggcg atcggttaca
121 tggacctcag accagagtgg caggccatgt gtttatactg tgggatctcc cataaacaac
181 agggcccttt ttccatgcca ggagccaccc gttgccatgt caacatggca ggctacagtt
241 cgagcagctg catcttttgt tgttttaatg agtggggaaa attctgccaa accaacgcag
301 ctttgggaag agtgctcaag ctggtattac tatgtaacta tgccaatgcc agcctccacc
361 ttcacaattg cagtgggatg ctggacagaa atgaagatgg agacatggtc atcaaatgat
421 ttggcaacag agagaccctt ctcaccttct gaggccaact tcaggcatgt tggtgtttgc
481 agtcacatgg aatacccctg ccgcttccag aatgcttctg ccaccaccca ggagatcatt
541 cctcatcggg tctttgcccc tgtgtgcctc acgggtgcct gccaagagac ccttctgcgg
601 ctgatccctc cttgcctctc agcagcacat tctgttctgg gagcacaccc gttctctcgg
661 ctggatgttc tcatcgtccc tgccaacttt ccaagtctgg ggatggccag cccacacatc
721 atgttcctct ctcagagcat cttgacagga gggaaccatc tctgtgggac ccgcctctgc
781 catgaaattg cccatgcctg gtttggccta gccatcgggg cccgagactg gacggaggag
841 tggctgagtg aaggcttcgc cactcacttg gaggatgtgt tttgggccac agcacagcag
901 ctggccccct atgaggcccg ggagcagcag gagctgaggg cttgtctgcg ctggcgtcgc
961 ctccaggacg agatgcaatg ctcccccgag gagatgcagg tgttaagacc cagtaaagac
1021 aaaactggcc acacaagtga ctcgggagca tctgttatca agcatggact taatccggag
1081 aagatcttca tgcaggtgca ttatttaaag ggctacttcc ttcttcggtt tcttgccaaa
1141 agacttggag atgaaaccta tttttcattt ttaagaaaat ttgtgcacac atttcatgga
1201 cagctgattc tttcccagga tttccttcaa atgctactgg agaacattcc agaagaaaaa
1261 aggcttgagc tgtctgttga aaacatctac caagactggc ttgagagttc cggaatacca
1321 aagccgctgc agagggagcg tcgcgccggg gcggagtgcg ggcttgcgcg gcaagtgcgc
1381 gccgaggtca cgaaatggat tggagtgaac cggagacccc gaaaacggaa gcgcagggag
1441 aaggaagagg tgtttgaaaa gcttcttcca gaccagctgg tcttgcttct ggagcatctc
1501 ttggagcaga agactctgag cccccgaact ctgcaaagcc tccagaggac ataccacctc
1561 caggatcagg atgcagaggt tcgccatcgg tggtgtgaac tcattgttaa gcacaagttc
1621 acgaaagcct acaaaagtgt ggagaggttc cttcaggagg atcaggccat gggtgtgtac
1681 ctctacgggg agctgatggt gagtgaggac gccagacagc agcagctcgc ccgtaggtgc
1741 ttcgagcgga ccaaggagca gatggatagg tcctcagccc aggtggtggc cgaaatgtta
1801 ttttaacgag gaaagaccac agcaagattc tttcattcgt ctcctcctag cctgggggac
1861 caggctcgaa ctgaccctgg acatcaaagg agggattatg tggctgctaa agccatcggc
1921 ccacagccct gttcacgtct tggtgcttct ctttcccaga ggctggtccc agccaggcac
1981 acacaaaagg cagattctcg taaacgcagc ctccctccct ggaggctgcc tcctgccctg
2041 gatctggagt ggagctgctc tgagattttg agttcttctg cagagatgat taaatatatc
2101 caagagacat tggaaaacct gctgaacatt ttacattggt ctgctcagca catggctgga
2161 tgcggatatt tctataattc cagaaagtca cacagctcct ctgtatgaga ccagtgggcg
2221 ccatttaaaa gaacaggatg agaatctaag atatattatt aataaatgta atggattttt
2281 tttttgtaaa aaaaaaaaaa aaaaa
//